Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1889 131 2e-25 seq1761 131 2e-25 seq51957 118 1e-21 >seq1889 Length=778003 Score = 131 bits (144), Expect = 2e-25 Identities = 166/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 69748 TTTCCTCCC---TGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATA 69804 ||||||||| ||||| | || | ||||||| |||| | || | ||||| |||| | Sbjct 333436 TTTCCTCCCCCTTGATCAACATAACGAGCAGTGTCATTAAACACACGAAGCATAGGAACA 333495 Query 69805 ATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTA 69864 || |||||||| | |||||||| ||| |||| || || ||| |||| || |||||| | Sbjct 333496 ATGCCATTAGAAGTCCCATTTGTCCCACAAATGTAGCTGCCTGTTGCACGGATATTATGA 333555 Query 69865 ATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCA 69924 | ||| | ||| |||||||| || ||| || | |||||| ||||| || ||| Sbjct 333556 ACAGAGAAACCAATTCCTCCAGCTGATTTGCTAATAACAGCACATTCCTTCAAGGTATCA 333615 Query 69925 TATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 |||| |||| |||||||||||| |||| | |||||| |||||| Sbjct 333616 AATATTCCCTGAATGCTATCATCTTTCATACACACAAGAAAGCAGCTA 333663 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| ||||||||||| || || | || ||||| ||||||||| |||| |||| || Sbjct 332899 CTCCTTTTCATATTGGGTGTACAAATTGTCAAATTCTTCTCCCCAATAATCAGCCAAACC 332958 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| |||||||| || | ||| ||||| ||||| | |||| || |||||| Sbjct 332959 GGGAGCCTCATTTGGGCAAAACAAAGACCATTGTCCATCACCTCGCACTCTTTCCATAAA 333018 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATT 69662 || || || ||||||||||| ||| ||||||| | | || |||||| || Sbjct 333019 GAGGTCAGGTATCCAAAGAGCATAAAATAGATCTCGAGCCCGATATTCTTCCTT 333072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 ||| ||||| ||||||||||| || |||||| ||||| | | | ||||| ||||| || Sbjct 331195 TAAAACTCTGCGAGTGTAAATGTTGGAGGTATAAGGTTCAAAACACTCATTGTTTCCAAG 331254 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| ||| ||||| ||||| ||||||||||| || Sbjct 331255 AATCTGACTGGTTGAAGCAGTGGGCATAGGTGCTAC 331290 >seq1761 Length=289715 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | ||||| | ||| |||| | ||||| |||| ||| ||| Sbjct 164355 CCCCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGTAGCATAGGAACAATGCCA 164414 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 |||||| |||||||||||||| ||||||||| || | | ||||| || | ||| Sbjct 164415 TTAGATGTACCATTTGTTCCACGAATATAACTGCCAGTGGAACGAATGTTGTGGACAGAA 164474 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| ||| ||| ||| | |||||| ||||| ||||||||||| Sbjct 164475 ACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACACTCCTTCAAGGTGTCATATATG 164534 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||||||| |||| | ||| || |||||| Sbjct 164535 CCTTCAATGCTATCATCTTTCATACACACAAGGAAGCAGCTA 164576 Score = 105 bits (116), Expect = 9e-18 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||| | || ||||| || ||||||||||| | ||| | || || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| ||||| || || || || || |||||||| | || || | |||||| Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 70110 CATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCC 70167 ||| || ||||||| |||||| | ||| | | | ||||| ||||| ||| | || Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCT--TGGACCTTCAATAGGTAGGATCTCTCA 164887 Query 70168 AGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACA 70221 || ||||| || ||||| || | || |||||||| || || || || ||| Sbjct 164888 AGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCACA 164941 >seq51957 Length=105213 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | || || | ||| | || | ||||| |||| ||| || Sbjct 20009 TCCCCCTTGATCAACATAACGCGCCGTATCATTGAATACACGTAGCATTGGAACAATGCC 19950 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| ||| | |||||||| ||| |||||||||||| | ||||||||||| | ||| Sbjct 19949 ATTGGATGTCCCATTTGTGCCACGAATATAACTTCCAGTAGCGCGAATATTGTGGACAGA 19890 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||| || || ||| ||| | ||| || ||||| ||||||||||| Sbjct 19889 GACACCAATTCCACCAGCTGATTTGCTGATAACAGCGCATTCCTTCAAGGTGTCATATAT 19830 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||| || |||||||||||| |||| | ||| || |||||| Sbjct 19829 ACCTTCAATGCTATCATCTTGCATGCACACAAGGAAGCAGCTA 19787 Score = 104 bits (114), Expect = 3e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || |||||||| | || ||||| || |||||||||||| | ||| | || || Sbjct 19659 GTCCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCATATGA 19600 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||| || || || || ||||| || |||||||| | |||||| | ||||||| Sbjct 19599 TATGTTTTGATGGCAGACTCAATATCATCCTTGTGAATTCCAACCGCGACCCTCATCAAC 19540 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || || ||||| | |||||| | ||| | | | ||||| ||||| || | || | Sbjct 19539 ATGTGTTGAGGCCTTTCTACAACCTTTCCT--TGGACCTTCAATAGGTAGGACCTCTCAA 19482 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACA 70221 | ||||| || ||||| || | || ||| |||| ||||| || || ||| Sbjct 19481 GGGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCGATCGTATATGATTACA 19429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686000337352920