Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq54992 111 1e-19 seq54143 96.9 3e-15 >seq54992 Length=480207 Score = 111 bits (122), Expect = 1e-19 Identities = 385/589 (65%), Gaps = 10/589 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || || || || | || |||||| |||||||||| ||||| |||| ||||| | Sbjct 460658 TGTTCCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAAGCTGAGGCCTCATTCT 460599 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATTGCATTAAAACCA 43825 |||| || || || ||||| | | | ||| | | |||||| | | | || || Sbjct 460598 GGACCGCCGAGGAGGTTGACCTCTCCGAGGACCTTTCTCATTGGGAATCCCTTTCTCCCG 460539 Query 43826 CAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 | || ||||| || || || | | || || ||||| || ||||| || || Sbjct 460538 -ACGAGAAACACTTCATTTCCCACATCCTTGCCTTCTTTGCCGCCTCTGACGGCATCGTT 460480 Query 43886 AATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTT 43945 || ||| | | | | |||| | | || || || | | || || || || Sbjct 460479 TTGGAGAATCTCGCTGGCAGGTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 460420 Query 43946 TATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGAT 44005 || || || || || ||||| || |||||||| || || |||||||||||| || | || Sbjct 460419 TACGGCTTCCAGATCGCCATCGAGAATATTCACTCCGAGATGTACAGTCTTTTGCTCGAG 460360 Query 44006 ACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 || |||||||| || | || | ||||||| || | || | || || || || || || Sbjct 460359 ACCTACATCAAGGACTCCGC-CCAGAAGCACCGCCTCTTCCACGCCATCGAGACCGTCCC 460301 Query 44065 -TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTG 44123 |||| | | || ||| | |||||||| ||||| | || || || | Sbjct 460300 TTGCG-TCGCTAAGAAGGCACAGTGGGCCCTGCGCTGGATCGACGGGGCCGAGTCCTTCG 460242 Query 44124 GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGTTTGCG 44182 || || | ||||| || || ||| ||||| || ||||| || || | | | ||| Sbjct 460241 CTGAGCGCATCGTCGCTTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAGCTTCTGC- 460183 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 ||||| || ||||| ||||| || || |||||||| || |||| || || || ||| | Sbjct 460182 GCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCCAACGAGCTG 460123 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG--TTACT 44289 || || || || || | || ||||| || || ||| || ||||| Sbjct 460122 ATCTCGCGAGACGAGGGGCTCCACTGCGACTTCGCGTGCCTGCTTTACT 460074 >seq54143 Length=39111 Score = 96.9 bits (106), Expect = 3e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 ||||||||||| |||||||||| ||||||| ||| ||||||| | || | ||||||| Sbjct 4919 CAGTTTTACGTGGCCAATGGTGAATTGTCATGCCAAATGTATCAGCGCTCTGCTGACATG 4860 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || || || ||||| || ||||||||| || || | |||||||| || Sbjct 4859 GGCCTTGGTGTGCCTTTCAACATTGCATCTTATGCTCTTCTGACATGCATGATTGCTCAT 4800 Query 41199 GTT 41201 ||| Sbjct 4799 GTT 4797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396943490797015