Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1533 114 1e-20 seq54652 109 5e-19 seq50979 105 6e-18 seq1025 100 2e-16 seq45900 98.7 8e-16 seq49365 95.1 1e-14 seq54980 91.5 1e-13 seq24692 91.5 1e-13 seq1014 89.7 4e-13 seq49028 87.8 2e-12 >seq1533 Length=248107 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CTCATGTTGCGCTCGTCTT 27096 ||| | ||| | ||||| || || || || ||||||||| || | ||| || | || | Sbjct 240018 TACGAGATGGAGAGTAGACTCCTTCTGTATGTTGTAGTCGGCTAAAGTTCGGC-CATCCT 239960 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 |||||||||| || ||| | ||||| ||||| ||||||||||| | ||||| ||||| Sbjct 239959 CGAGCTGTTTCCCAGCGAAGATGAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTATCTT 239900 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||||||| || | | || | || || | || || || ||||| ||||| | | Sbjct 239899 GGATCTTGGCCTTGACATTGTCGATGGTATCCGAGGACTCGACCTCTAGGGTTATGGTCT 239840 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | ||||| || |||||||| ||||| ||||| | ||| Sbjct 239839 TCCCCGTTAGGGTTTTCACGAAGATCTGCATGGTTGC 239803 >seq54652 Length=76240 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || |||||||| || ||| | ||| || | || ||||||||||| || Sbjct 48116 GTGGACTCCTTCTGGATATTGTAATCAGCTAAGGTTCGGC-CATCCTCGAGCTGTTTCCC 48058 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| ||||| || |||||||| | |||||| || || ||||||| || Sbjct 48057 AGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGGATCTTGGCCTT 47998 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | || ||||| || || ||||| | || ||||| || || Sbjct 47997 AACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTTATGGTCTTCCCCGTTAGGGT 47938 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||| ||||| ||||| | ||| Sbjct 47937 TTTCACGAAGATCTGCATGGTTGC 47914 >seq50979 Length=594689 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || |||||||||||| | | | || |||| |||||||| || || Sbjct 43798 CGTCGACTCCTTCTGGATATTGTAGTCGGCTAGGGTCCGGCCGTCCTCGAGCTGCTTGCC 43857 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 43858 GGCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 43917 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | || || || || ||||| |||| || || || || || Sbjct 43918 AACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATAGTCTTCCCGGTTAGGGT 43977 Query 27230 TTTCACAAAGATTTGCAT 27247 ||| |||||||| ||||| Sbjct 43978 TTTGACAAAGATCTGCAT 43995 >seq1025 Length=2429094 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG-CT 27079 ||||| |||| || | |||||||| || || || || || ||||| ||||| ||| || Sbjct 1182143 CCTCCACGCAGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAATCGGCT 1182084 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 |||| | | ||||| | || || || || | || | | ||| |||||||| || Sbjct 1182083 AATGTCCTTC-CATCTTCTAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGG 1182025 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || |||||| || | | |||| || || | | |||||| Sbjct 1182024 GATACCCTCCTTGTCTTGGATCTTTGCCTTGACATTATCTATGGTATCCGAGCTTTCAAC 1181965 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| | ||||||| ||| ||||||| || |||||||||||||||||| Sbjct 1181964 TTCCAAGGTTATAGTTTTTCCCGTCAAGGTCTTCACAAAGATTTGCATA 1181916 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || | || || || ||||| || ||||| || Sbjct 1181915 CCACCGCGGAGGCGGAGCACCAAGTGGAGGGTTGATTCCTTTTGGATGTTGTAATCCGCA 1181856 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||||||||| || || || | || || | ||| || || || || Sbjct 1181855 AGGGTCCGACCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 1181796 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| || | | || | |||||| | | ||| || Sbjct 1181795 ATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTATCAATAGTGTCCGAGCTTTCGACC 1181736 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | |||||| | ||| || || || ||||| ||||||||||||||| Sbjct 1181735 TCCAAAGTTATGGTTTTTCCAGTAAGGGTTTTAACAAAGATTTGCATA 1181688 >seq45900 Length=1264 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTG 27103 ||| | ||| || || || ||||||||||||||| | | |||| |||| || | ||| Sbjct 500 ATGGAGCGTGGACTCCTTCTGAATATTGTAGTCGGCAAGGGTGCGACCGTCCTCCAACTG 441 Query 27104 TTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTT 27163 || |||||| | || | |||||| |||||||| || | ||| || || || |||||| Sbjct 440 CTTCCCGGCGAAGATCAAACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCTT 381 Query 27164 GTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGT 27223 | || | | | || | ||||| | | || || || ||||| || | ||||| || Sbjct 380 GGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGT 321 Query 27224 CAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || ||||| ||||| Sbjct 320 GAGGGTTTTGACGAAGATCTGCAT 297 >seq49365 Length=33059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | | | | ||||||||||||| || ||| Sbjct 27185 GTTGATTCCTTCTGGATATTGTAGTCGGCGAGGGTCCTGCCGTCTTCGAGCTGCTTTCCG 27126 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | ||| || ||||| || | || || ||||| ||||||| || Sbjct 27125 GCGAAGATCAGCCTCTGCTGGTCCGGTGGGATGCCTTCCTTATCCTGGATCTTGGCCTTA 27066 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || |||||| Sbjct 27065 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTT 27006 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 27005 TTCACGAAGATTTGCAT 26989 >seq54980 Length=436967 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 |||||| || || || || || |||||| | | | || |||| |||||||| || || Sbjct 429158 CGTAGACTCCTTCTGGATGTTATAGTCGGCTAAGGTACGGCCGTCCTCGAGCTGCTTTCC 429217 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || || ||||| | ||||| || || |||||| || Sbjct 429218 GGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCCTT 429277 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||| | || || || || || || || | || || || || || Sbjct 429278 CACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGT 429337 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 429338 TTTCACGAAGATCTGCAT 429355 >seq24692 Length=691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 |||||| || || || || || |||||| | | | || |||| |||||||| || || Sbjct 239 CGTAGACTCCTTCTGGATGTTATAGTCGGCTAAGGTACGGCCGTCCTCGAGCTGCTTTCC 180 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| || || ||||| | ||||| || || |||||| || Sbjct 179 GGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCCTT 120 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||| | || || || || || || || | || || || || || Sbjct 119 CACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGT 60 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 59 TTTCACGAAGATCTGCAT 42 >seq1014 Length=2264649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || | || || || ||||| ||||| |||||| || || | || ||||||| Sbjct 109031 ACCAAGTGGAGGGTTGATTCCTTTTGGATATTATAGTCGG-CAAGTGTCCGACCGTCTTC 108973 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || || || || || | || | | |||||| || || || | |||||| || || Sbjct 108972 AAGTTGCTTGCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTG 108913 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | || | ||||| | | ||| ||||| | |||||| | ||| Sbjct 108912 GATCTTAGCCTTGACATTATCAATGGTGTCCGAGCTTTCGACTTCCAAAGTTATGGTTTT 108853 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||||||| ||||| ||||||||||||||| Sbjct 108852 TCCCGTCAAGGTTTTAACAAAGATTTGCATA 108822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| || || ||||| || |||| | |||||| Sbjct 108803 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTATAGTCAGCCAAAGTGCGACCATCTTCG 108744 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || | ||||| | ||| || ||||| || | ||||| || || | Sbjct 108743 AGCTGCTTACCAGCAAAGATGAGCCTCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGG 108684 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| ||| | | || | |||||| | | ||| || || || || || | || Sbjct 108683 ATTTTGGCTTTTACATTGTCAATAGTGTCCGAGCTTTCCACCTCAAGGGTGATTGTCTTT 108624 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| || ||||| || ||||| Sbjct 108623 CCGGTTAGAGTCTTAACAAATATCTGCAT 108595 >seq49028 Length=66169 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 |||||| || || || || || |||||| | | | || |||| |||||||| || || Sbjct 54999 CGTAGACTCCTTCTGGATGTTATAGTCGGCTAAGGTACGGCCGTCCTCGAGCTGCTTTCC 54940 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| || || ||||| | ||||| || || |||||| || Sbjct 54939 AGCGAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTAGCCTT 54880 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | || | ||||| | || || || || || || || | || || || || || Sbjct 54879 CACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGGGTGATGGTCTTCCCGGTTAGGGT 54820 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 54819 TTTCACGAAGATCTGCAT 54802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424386458112936