Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq54992 116 1e-20 seq50617 107 6e-18 >seq54992 Length=480207 Score = 116 bits (128), Expect = 1e-20 Identities = 393/597 (66%), Gaps = 19/597 (3%) Strand=Plus/Minus Query 443281 TGTTCCCCGTTCAGCATCCCGACATCTACGACATGTACAAACGACAAGTGGCCCAGTTTT 443340 ||||||| | ||| | || || || | || |||||||| | | |||| || | Sbjct 460658 TGTTCCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAAGCTGAGGCCTCATTCT 460599 Query 443341 GGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTA 443400 ||||| |||||| |||| |||||| ||||| | | ||||| ||| || ||| Sbjct 460598 GGACCGCCGAGGAGGTTGACCTCTCCGAGGACCTTTCTCATTGG---GAATCCCTTTCTC 460542 Query 443401 GCCATGAACGCGATTTC--TTCAAATGCATCTTGGCCTTCTTTGCACCGAGCGACGGTAT 443458 | | || | ||| ||| | |||| | ||||||||||| | ||||| || Sbjct 460541 CCGACGAGAAACACTTCATTTCCCA--CATCCTTGCCTTCTTTGCCGCCTCTGACGGCAT 460484 Query 443459 CGTCGGTGAGAATCTGG-TGACGCGTTTCTACGAAAT-GGTAGTGTACACCGAGGCCCGC 443516 ||| |||||||| | || | ||| | ||| ||| | | ||||||||||| Sbjct 460483 CGTTTTGGAGAATCTCGCTGGCAGGTTCAT--GAAGGAGGTCCAGGTCGCCGAGGCCCGC 460426 Query 443517 TACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTG 443576 |||||||| ||||| ||| || ||||| |||||| ||||| | ||||||| ||| Sbjct 460425 GCCTTCTACGGCTTCCAGATCGCCATCGAGAATATTCACTCCGAGATGTACAGTCTTTTG 460366 Query 443577 ATCAAGACACTAATTCC-GAACGAAGACGAACAGCGGTCCATCTTCTCATCGTTCATGAC 443635 || |||| ||| || | || | | | ||| | ||||| | || ||| Sbjct 460365 CTCGAGAC-CTACATCAAGGACTCCGCCCAGAAGCACCGCCTCTTCCACGCCATCGAGAC 460307 Query 443636 CACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCT 443695 | || || || || | ||| | | ||||| | ||| |||| | | | | Sbjct 460306 CGTCCCTTGCGTCGCTAAGAAGGCACAGTGGGCCCTGCGCTGGATCGACGGGGCCGAG-T 460248 Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCA 443754 | ||||| ||||| | |||||||| || ||| || ||||| | || || ||| | Sbjct 460247 C--CTTCGCTGAGCGCATCGTCGCTTTCGC-GTGTGTAGAAGGTATCTTCTTCTCCGGAA 460191 Query 443755 GCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGT 443814 |||| || |||||||||||||||| ||||| || | |||| |||||||||||| Sbjct 460190 GCTTCTGCG-CCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCC 460132 Query 443815 AACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 ||||| |||||| || |||||||| | || ||||||||||| || || || ||| Sbjct 460131 AACGAGCTGATCTCGCGAGACGAGGGGCTCCACTGCGACTTCGCGTGCCTGCTTTAC 460075 >seq50617 Length=115889 Score = 107 bits (118), Expect = 6e-18 Identities = 128/170 (75%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 443706 GAGCGACTAGTCGCTTTTGCTGTG-GTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 ||||| || |||| || || ||| |||||||| | || || ||| ||||| || Sbjct 92276 GAGCGTCTCATCGCCTTCGC-GTGCGTCGAAGGGATCTTCTTCTCCGGAAGCTTCTGCG- 92333 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 |||| ||||||||||||||||| || | |||| ||||| ||||| ||||| |||| Sbjct 92334 CCATATTCTGGTTGAAAAAGCGCGGGTTGATGCCTGGTCTCACCTTCTCCAACGAGCTGA 92393 Query 443825 TCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 || || |||||||| |||||||||||||||| || || || |||||| Sbjct 92394 TCTCCCGTGACGAGGGGCTGCATTGCGACTTCGCGTGCCTGCTATACACC 92443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1586182850229335