Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq54992 118 1e-21 seq50617 100 4e-16 seq1761 98.7 1e-15 seq51957 93.3 5e-14 >seq54992 Length=480207 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| ||||| || || || || || |||||| ||||| ||||| | || Sbjct 460099 GTGGAGCCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAGCC 460158 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| | || |||||||| ||||||||||||||||| || ||||| Sbjct 460159 GCGCTTCTTCAACCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATACCTTCTACACA 460218 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||| || || | | ||| || |||||||| Sbjct 460219 CGCGAAAGCGACGATGCGCTCAGCGAAGGA 460248 >seq50617 Length=115889 Score = 100 bits (110), Expect = 4e-16 Identities = 279/425 (66%), Gaps = 11/425 (3%) Strand=Plus/Minus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || ||||| || ||||| || || || || |||||| ||||| ||||| | || Sbjct 92415 TGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAACCCG 92356 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 ||||| |||||||| | || |||||||| |||||||||||||| || || || ||| Sbjct 92355 CGCTTTTTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAC 92296 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGA--GCGAGACTTTGCATCAAACCATTTCATTG 122848 || || || | || || || || ||||| |||| | || | ||| || | Sbjct 92295 GCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAG-----CCGTCGATCCAGCGCAGGG 92241 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCT 122908 |||| | |||||||| | | ||| || || || | |||||| | || | | | || Sbjct 92240 CCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGGTGCT 92181 Query 122909 TTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCA 122968 | ||| | |||||| ||||| | || | ||| ||| | ||| |||| Sbjct 92180 TCTCATCTGAATCCTTGATGTAGGTCTCCAGCAACAGACTATACATCTCGGAGTGAATAT 92121 Query 122969 TTTCATTATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATC 123026 |||| |||||| || | ||||||| | ||| || ||| | ||| ||||| | Sbjct 92120 TTTC--GATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCAACCTGGACCTCCTT 92063 Query 123027 CGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAG 123086 | || | | || ||||| ||||| || ||||| || | |||||||| || || Sbjct 92062 CATGAACCTCCCAGCGAGGTTCTCCAAAACGATGCCATCTGAAGCTGCAAAGAAAGCTAG 92003 Query 123087 GATGT 123091 || || Sbjct 92002 GACGT 91998 >seq1761 Length=289715 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||||| |||||| || |||||||||| |||||| ||||| |||||| | ||| Sbjct 163432 ACATATCGTGGAAGAGCAATTGATGCCAGATTGCAGACAGCAGTCTCAGTTGGACTTGTA 163491 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | || || ||||||||||| ||| || || || |||||||||| ||||| Sbjct 163492 TACTCAATTATCTCCGTACATAAGTTTGAAGATTTGATGGTTCCCAAATTCTGCTGGTTG 163551 Query 111341 CTCTTCTTGTTGCACGCATCCT 111362 || ||| ||||||| | ||||| Sbjct 163552 CTTTTCCTGTTGCAAGTATCCT 163573 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || || ||||| || ||||| || | || ||| ||||| | || Sbjct 164699 TGAGGCCTTGGAGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGA 164758 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | | |||||| | | ||||||||||||| | | ||| || || | || Sbjct 164759 GACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCA 164818 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| || || |||| | | | || | || || | | || || Sbjct 164819 ACCCTCATCAACATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGA-CCTTCAATAGGTA 164877 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | ||||||||||||||| |||||||||| || | ||| |||| || Sbjct 164878 GGATCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCG 164925 Score = 82.4 bits (90), Expect = 1e-10 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 111019 TGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 ||||||||||| || |||||| ||| ||| |||||||| || || || | ||| Sbjct 162944 TGAATCAAATGGCATGCCAAGCAAAATGAATGTATCAGCGAGACCCTGGACTCCAATACC 163003 Query 111079 AATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTC 111138 ||||||||| ||||| | ||| ||| ||| ||||| ||||| || || |||| || Sbjct 163004 AATAGGTCTATGTCGAAAATTTGACCTTCTTGCAGTTTCAACAGGGTAGTAATTAACATC 163063 Query 111139 AATGACTCGGTTTAGATTTTTGGTAACAAT 111168 ||| | | ||| || || || || ||||| Sbjct 163064 AATTATTTTGTTGAGGTTCTTAGTTACAAT 163093 >seq51957 Length=105213 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 111219 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 111278 ||||||| |||||| || |||||||| | |||||| ||||| ||||| | || Sbjct 20927 TGACATAACGTGGAAGAGCAATTGATGCAAGATTGCATACAGCAGTCTCTGTTGGACTTG 20868 Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 | ||||| | || || ||||||||||| ||| || || || |||| ||| | ||||| Sbjct 20867 TATACTCAATTATCTCCGTACATAAGTTTGAAGATTTGATGGTTCCCAGATTTTGTTGGT 20808 Query 111339 TACTCTTCTTGTTGCACGCATCCT 111362 | || ||| ||||||| ||||||| Sbjct 20807 TGCTTTTCCTGTTGCAGGCATCCT 20784 Score = 91.5 bits (100), Expect = 2e-13 Identities = 164/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || || ||||| || ||||| || | || ||| ||||| | || Sbjct 19671 TGAGGCCTTGGGGTCCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGA 19612 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | | ||||| | | | |||| ||||| || ||| ||| || || | ||| Sbjct 19611 GACATCATATGATATGTTTTGATGGCAGACTCAATATCATCCTTGTGAATTCCAACCGCG 19552 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 112119 |||| ||| ||||||| || || |||| | | | || | || || | | || || Sbjct 19551 ACCCTCATCAACATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGA-CCTTCAATAGGTA 19493 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCGCTTCGTAT 112175 | | ||||||||||||||| |||||||||| || | ||| | || || |||||| Sbjct 19492 GGACCTCTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCG-ATCGTAT 19438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627201404128800