Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq50617 147 3e-30 seq54992 140 4e-28 seq51103 116 5e-21 seq48769 104 3e-17 seq1182 98.7 1e-15 seq1321 89.7 6e-13 >seq50617 Length=115889 Score = 147 bits (162), Expect = 3e-30 Identities = 193/265 (73%), Gaps = 13/265 (5%) Strand=Plus/Minus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || ||||||||||||||||| || || || |||||| ||||| ||||| | || Sbjct 92415 TGCAGCCCCTCGTCACGGGAGATCAGCTCGTTGGAGAAGGTGAGACCAGGCATCAACCCG 92356 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 ||||| ||||||||||| || || || || || |||||||||||||| || || ||| Sbjct 92355 CGCTTTTTCAACCAGAATATGGCGCAGAAGCTTCCGGAGAAGAAGATCCCTTCGACGCAC 92296 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGA--GCGGGACTTTGTATCAAACCACTTCATCG 130205 ||||| || | ||||||||| |||||||| || | | || | ||| || | Sbjct 92295 GCGAAGGCGATGAGACGCTCCGCAAAGGACTCCGAGCC-----GTCGATCCAGCGCAGGG 92241 Query 130206 CCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA---GTTCCT 130262 ||||||| ||||| || | | ||| |||||||||| ||| || | |||| | | || Sbjct 92240 CCCACTGGGCCTTCTTAGCCACACAGGGGACGGTCTCGATGGCATGGAAGAGGCGGTGCT 92181 Query 130263 TCTTTTCTGATGGATCTTTGATGTA 130287 ||| ||||| ||| |||||||| Sbjct 92180 TCTCATCTGA---ATCCTTGATGTA 92159 >seq54992 Length=480207 Score = 140 bits (154), Expect = 4e-28 Identities = 170/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| || ||||| || || || |||||| |||||| ||||| | || Sbjct 460099 GTGGAGCCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGGCATCAAGCC 460158 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||||||||||||||| || || || || || ||||||||||| || || ||||| Sbjct 460159 GCGCTTCTTCAACCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATACCTTCTACACA 460218 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 |||||| || | || |||||||| ||||| || | || | ||| || || Sbjct 460219 CGCGAAAGCGACGATGCGCTCAGCGAAGGACTCGGCC---CCGTCGATCCAGCGCAGGGC 460275 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 |||||| ||||| || ||| || |||||||||| ||| || | ||||| Sbjct 460276 CCACTGTGCCTTCTTAGCGACGCAAGGGACGGTCTCGATGGCGTGGAAGAG 460326 >seq51103 Length=109835 Score = 116 bits (128), Expect = 5e-21 Identities = 245/356 (69%), Gaps = 17/356 (5%) Strand=Plus/Minus Query 11861 GACGCCCTTCTATCCACGATCCGTCTATG--GCGTCTCAAAGGTTGCGGCACATTGGCTC 11918 |||||| ||| |||| |||||| || | ||||| |||| | || || |||||| | Sbjct 21342 GACGCCGTTCCATCCCCGATCCCCATACGCCGCGTC-CAAATGC-GCCGCGCATTGGTAC 21285 Query 11919 GTGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCAC 11978 | ||| ||||| || | ||||| | | ||||||| ||| || |||||||| ||| Sbjct 21284 ACGGTGAACTACCGCGAGGCGTATGGGATATATGCGTGCAATGGGATACTCTTCAATCAC 21225 Query 11979 GAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCA 12033 ||||| || || || ||| | | |||||||| | ||||||||| || ||| | Sbjct 21224 GAGTCGCCGCGGCGGGGCGAGAACTTCGTGACGAGGAAGATCACGCGTGCGGTGGGACGG 21165 Query 12034 AACAA-ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 12092 | ||| |||| || | || || || | | ||||| |||| |||| ||| Sbjct 21164 ATCAAGATCG--GCCTCCAA-AGCAAGCTCTTCC---TTGGGAATCTCAGCGCCTCCAGG 21111 Query 12093 GACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAG 12152 ||||||||| ||| |||||| || || || |||||| | | || || ||||| || Sbjct 21110 GACTGGGGATTCGCCGGGGACTACGTGGAGGCAATGTGGATGATGCTGCAGCAAGACAAG 21051 Query 12153 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 12208 ||||||| || || || ||||||| |||| | ||| | || ||||||| |||| Sbjct 21050 CCGGACGACTACGTGGTTGCGACGGAGGAGTCGCACACGGTGGAGGAGTTC-TTGA 20996 >seq48769 Length=5169 Score = 104 bits (114), Expect = 3e-17 Identities = 201/291 (69%), Gaps = 13/291 (4%) Strand=Plus/Minus Query 11924 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAGTC 11983 ||| ||||| || | ||||| | | ||||||| ||| || |||||||| |||||||| Sbjct 5123 GAACTACCGCGAGGCGTATGGGATATATGCGTGCAATGGGATACTCTTCAATCACGAGTC 5064 Query 11984 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-----CGATGGTATCAAACAA 12038 || || || ||| | | |||||||| | ||||||||| || ||| | | ||| Sbjct 5063 GCCGCGGCGGGGCGAGAACTTCGTGACGAGGAAGATCACGCGTGCGGTGGGACGGATCAA 5004 Query 12039 -ATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTG 12097 |||| || | || || || | | ||||| |||| |||| |||||||| Sbjct 5003 GATCG--GCCTCCAA-AGCAAGCTCTTCC---TTGGGAATCTCAGCGCCTCCAGGGACTG 4950 Query 12098 GGGACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGA 12157 |||| ||| |||||| || || || |||||| | | || || ||||| || |||| Sbjct 4949 GGGATTCGCCGGGGACTACGTGGAGGCAATGTGGATGATGCTGCAGCAAGACAAGCCGGA 4890 Query 12158 CGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGA 12208 ||| || || || ||||||| |||| | ||| | || ||||||| |||| Sbjct 4889 CGACTACGTGGTTGCGACGGAGGAGTCGCACACGGTGGAGGAGTTC-TTGA 4840 >seq1182 Length=383271 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| |||||||| || ||||| ||||| || | ||||||||| || Sbjct 49771 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCCA-- 49714 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | ||||| | | ||| | || || || ||||| ||||||||||| || || Sbjct 49713 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCATCAATCTCATCGATGAACACAATG 49654 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || ||| || || | || | ||||||| || || || || Sbjct 49653 CACGG-CGCTTTCGACTTGGCTTTCTCGAACAAGTCCCTCACTCTCGAAGCCCCAACTCC 49595 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 |||||||| |||||||| | | |||| ||| || ||| || ||| | || || Sbjct 49594 CACAAACAATTCCACAAACTCCGAAGCGGCACACGAGAAGAATGGCACGCCTGCCTCGCC 49535 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || |||| || | ||||||||||| || || || Sbjct 49534 TGAGACTGCTCTTGCCAATAGGGTCTTCCCAGTACCGGG 49496 >seq1321 Length=289959 Score = 89.7 bits (98), Expect = 6e-13 Identities = 251/381 (66%), Gaps = 6/381 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| || || ||||| ||||| || | ||||||||| || Sbjct 178808 AAACCCATCCATCTCCGTCAACAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCCA-- 178751 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | | | ||||| | | ||| | || ||||| ||||| || || ||||| || || Sbjct 178750 CCTCCAAGTCCCGCCCCTCTCTGCCTCCCTACGGCATCAATCTCGTCTATGAACACAATG 178691 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || ||| || | || | ||||||| || || || || Sbjct 178690 CACGG-CGCTTTAGACTTTGCCTTTTCGAACAAGTCCCTCACTCTCGAAGCCCCAACTCC 178632 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||||||| |||||||| | | || | ||| || ||| || ||| || ||| || Sbjct 178631 AACAAACAATTCCACAAACTCCGAAGCCGCACACGAGAAGAATGGCACGCCAGCTTCCCC 178572 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACC 14448 || | |||| ||| | || ||||| || || || || || | || | || Sbjct 178571 TGCTACCGCTCTGGCCAATAGAGTCTTACCGGTACCGGGCGGTCCCACCAGCAAACATCC 178512 Query 14449 ACGTGGGATCCTGGCACCACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGAT 14508 |||||| |||| || | || ||| || || | ||| | ||| || |||| Sbjct 178511 CTTTGGGATTTTGGCTCCCAGGGCAGTGTACTTATCTGGGTTTTTCAAGAAATCAACGAC 178452 Query 14509 TTCTTCCAATTCATCCTTCGC 14529 ||||| ||||||| |||||| Sbjct 178451 TTCTTGCAATTCAAGCTTCGC 178431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617617296256680