Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq54992 136 5e-27 seq50617 129 7e-25 seq55722 125 8e-24 seq1182 86.0 7e-12 >seq54992 Length=480207 Score = 136 bits (150), Expect = 5e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| |||||||| || |||| || |||||||| || |||||||||||||| || | Sbjct 460248 TCCTTCGCTGAGCGCATCGTCGCTTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAGC 460189 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | ||| | |||||||| || | ||||| ||||| |||||||||| Sbjct 460188 TTCTGCGCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCCAAC 460129 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| || |||||||| |||||| Sbjct 460128 GAGCTGATCTCGCGAGACGAGGGGCTCCAC 460099 >seq50617 Length=115889 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||| ||||| ||| |||| || ||||| || || || ||||||||||| || | Sbjct 92267 TCCTTTGCGGAGCGTCTCATCGCCTTCGCGTGCGTCGAAGGGATCTTCTTCTCCGGAAGC 92326 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | ||| | || ||||| || | ||||| |||||| |||||||||| Sbjct 92327 TTCTGCGCCATATTCTGGTTGAAAAAGCGCGGGTTGATGCCTGGTCTCACCTTCTCCAAC 92386 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||||| ||||| ||||||||||| || || Sbjct 92387 GAGCTGATCTCCCGTGACGAGGGGCTGCA 92415 >seq55722 Length=703388 Score = 125 bits (138), Expect = 8e-24 Identities = 300/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || || || | ||| | ||| ||||| || || | | || || || || Sbjct 349607 TCAAACCGTCCAGGCCTAAGTAACGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGCA 349548 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 | |||| ||||| || | | || ||||||||||| || |||||||| ||||||| | Sbjct 349547 ACCACAATGATACCAGTATTACCTTCGAAACCATCCATTTCCGTCAAAAGCTGGTTAAGA 349488 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9704 |||||||| | |||||||||| || | | | |||| | | ||| ||| || | Sbjct 349487 GTTTGTTCTCTTTCATCATTCCCT--CCACCGATTCCAGTTCCTCTTTGTCGTCCAACAG 349430 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGAT 9764 ||||||| ||||||| || || ||||| || ||| || || || || |||| Sbjct 349429 CATCAATTTCATCAACAAATACAATGCAAGGAGCATTCTCCTTGGCCTTTTTGAAAAGAT 349370 Query 9765 CCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9824 | || || || ||| || ||||||||||||||||| ||||| | || | | | || Sbjct 349369 CACGAACTCGGGAGGCACCAACACCAACAAACATCTCAACAAACTCTGAACCTG-AGATG 349311 Query 9825 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9883 | || || || ||| || |||||| ||||| || ||| || | |||||| || || Sbjct 349310 GAGAAAAATGGAACACCAGCTTCACCAGCAATCGCCTTGGCTAGCAAAGTCTTCCCAGTT 349251 Query 9884 CCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTC 9943 || || ||| || || | ||| |||||| || ||| || || | || Sbjct 349250 CCAGGAGGACCAATAAGAAGAACCCCTTTTGGAATGCGAGCCCCAATTGCAGTAAACCTT 349191 Query 9944 TCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||||| | || ||||| ||||| | ||| Sbjct 349190 TCAGGCTTTTTCAGAAACTCCACCACTTC 349162 >seq1182 Length=383271 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/125 (76%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| ||||| || ||||| |||||||| |||| ||||||||| | Sbjct 49771 AAACCCATCCATCTCCGTCAAGAGCTGGTTGATAGTTTGCTCCCTCTCATCATTCCC--A 49714 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | ||| | ||||| |||||||||||||| ||||| || ||| Sbjct 49713 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCATCAATCTCATCGATGAACACAATG 49654 Query 9731 CATGG 9735 || || Sbjct 49653 CACGG 49649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582489415719720