Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq50617 210 2e-49 seq54992 205 1e-47 seq1451 84.2 2e-11 >seq50617 Length=115889 Score = 210 bits (232), Expect = 2e-49 Identities = 595/899 (66%), Gaps = 20/899 (2%) Strand=Plus/Plus Query 59530 TTCTCGCGCCGAGCACCGCGCGTTTCACAACCTTTCCTATACGGTACCCGGATCTGTGGG 59589 ||||||| |||| | | |||||| | ||||| || | |||||| || | |||| Sbjct 91827 TTCTCGCTCCGAATCCGGACCGTTTCTGCATGTTTCCGATCCAGTACCCCGAAATATGGG 91886 Query 59590 CCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAG 59649 |||| |||||||| | || |||||| | | ||||||| |||||||| | | Sbjct 91887 AGATGTACAAGAAAGCCGAGGCCTCTTTCTGGACTGCCGAGGAGGTTGACCTCTCTCAGG 91946 Query 59650 ACCTGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGG 59709 |||| | ||||| |||| ||||||| | || || || ||||| | Sbjct 91947 ACCTCCGCCAATGGGAAGCCCTCACCCCCGACGAGAAACACTTTATTTCCCACGTCCTAG 92006 Query 59710 CCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGG 59769 | ||||| || || ||||| || || |||| || | | || || |||| Sbjct 92007 CTTTCTTTGCAGCTTCAGATGGCATCGTTTTGGAGAACCTCGCTGGGAGGTTCATGAAGG 92066 Query 59770 ATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCC 59829 | |||||| ||||||||||||| | ||||||| | ||| || ||| ||| | Sbjct 92067 AGGTCCAGGTTGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATCGAAAATATTC 92126 Query 59830 ACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTG 59889 ||||||||| ||| || || | || | | |||||||| | || |||||| Sbjct 92127 ACTCCGAGATGTATAGTCTGTTGCTGGAGACCTACATCAAGGATTCAGATGAGAAGCACC 92186 Query 59890 GTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 | || |||| |||||| ||||| |||||| | || | || || | |||||| || Sbjct 92187 GCCTCTTCCATGCCATCGAGACCGTCCCCTGT-GTGGCTAAGAAGGCCCAGTGGGCCCTG 92245 Query 59949 CAGTGGAT-GAGTCCT-GGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 | ||||| || || |||| || ||||| | |||||||| || || || ||||| | Sbjct 92246 CGCTGGATCGACGGCTCGGAG--TCCTTTGCGGAGCGTCTCATCGCCTTCGCGTGCGTCG 92303 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 |||| ||||||||||| || ||||| || || |||||| | |||||||| || | | Sbjct 92304 AAGGGATCTTCTTCTCCGGAAGCTTCTGCGCCATATTCTGGTTGAAAAAGCGCGGGTTGA 92363 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 |||| || || | ||||||||||||||||| ||||| |||||||| || ||| || | Sbjct 92364 TGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCCCGTGACGAGGGGCTGCATTGCGACT 92423 Query 60127 TTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAA--TGCCCTTCCAAGGATATTCACA 60183 | || ||| | ||| || | | |||| |||| || || || | ||| Sbjct 92424 TCGC-GTGCCTGCTATACACCCTCCTA-AGGAAGAAGCTGAGTGAGCA--GCGCGTCAAG 92479 Query 60184 AGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGC 60242 | | || | | ||| || | ||||| |||||| | || ||||| |||||| Sbjct 92480 GGGATCGTCCGCGACGCGGTGGAGATCGAGAGGGAGTTCGTGTGCGACGCGCTACCATGC 92539 Query 60243 AAACTCATAGGTATGGACGCTGGAGA---AATGACGCAGTACATTCAGTTTGTCGCGGAC 60299 | | || ||| || ||||| |||| |||||||| |||| || || || Sbjct 92540 GCGTTGGTGGGGATGAAC---GGAGATCTGATGAGCCAGTACATCGAGTTCGTGGCCGAT 92596 Query 60300 CGCCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGG 60359 | ||| ||| | ||| ||| ||| || ||| || | ||||| || || ||| Sbjct 92597 AGGCTCTTGGGCGCGTTCGGATGCGGAAAGATCTACAATGTTCAGAACCCGTTTGATTGG 92656 Query 60360 ATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||| ||||||||| ||||||||||||| ||||| || ||| ||||||| || || Sbjct 92657 ATGGAGCTGATCTCGTTGCAAGGGAAGACCAATTTCTTCGAAAAGAGGGTCGGAGAGTA 92715 >seq54992 Length=480207 Score = 205 bits (226), Expect = 1e-47 Identities = 577/870 (66%), Gaps = 26/870 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | ||||||||| | |||| |||| |||||||| | ||||||||| Sbjct 460656 TTCCCGATCCAGTACCCGGAAATATGGGAAATGTACAAGAAAGCTGAGGCCTCATTCTGG 460597 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||||||| |||||||| ||| ||||| ||||||| || | |||| Sbjct 460596 ACCGCCGAGGAGGTTGACCTCTCCGAGGACCTTTCTCATTGGGAATCCCTTTCTCCCGAC 460537 Query 59682 GAGCAGCATTTCAT---CAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||| | || ||||| | | || ||| |||||||| || || ||| || || || Sbjct 460536 GAGAAACACTTCATTTCCCACAT---CCTTGCCTTCTTTGCCGCCTCTGACGGCATCGTT 460480 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 |||| ||| | | | || ||||| |||||| | ||||||||||| | ||| Sbjct 460479 TTGGAGAATCTCGCTGGCAGGTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTC 460420 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 |||| | ||| ||| || |||| ||| |||||||||| |||| || || |||| Sbjct 460419 TACGGCTTCCAGATCGC-CATCGAGAATATTCACTCCGAGATGTACAGTCTTTTGCTCGA 460361 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GTCCC 59916 | | ||||||| | | ||||| | || |||| ||||| ||||| ||||| Sbjct 460360 GACCTACATCAAGGACTCCGCCCAGAAGCACCGCCTCTTCCACGCCATCGAGACCGTCCC 460301 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTCCTGGAGCATCA 59972 || || | || ||| | |||||| ||| ||||| | | || ||| || Sbjct 460300 TTGC-GTCGCTAAGAAGGCACAGTGGGCCCTGCGCTGGATCGACGGGGCC--GAG--TCC 460246 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || || | ||||| || || || ||||| ||||||||||| || ||| Sbjct 460245 TTCGCTGAGCGCATCGTCGCTTTCGCGTGTGTAGAAGGTATCTTCTTCTCCGGAAGCTTC 460186 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || |||||| | || ||||| ||| | ||||| || |||| |||||||||||| Sbjct 460185 TGCGCCATCTTCTGGTTGAAGAAGCGCGGCTTGATGCCCGGTCTGACCTTCTCCAACGAG 460126 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 ||||| || || |||||||| ||||| || || || ||| | ||| || || || Sbjct 460125 CTGATCTCGCGAGACGAGGGGCTCCACTGCGACTTCGC-GTGCCTGCTTTACTC---TCT 460070 Query 60152 ATTG-GAAAAATGC-CCTTCCAAGGATATTCACAAGATTGTTCAGTG-GGCTTGTGAAGT 60208 ||| ||||| || | | | ||| || | || | | || || | Sbjct 460069 CTTGAAAAAAAAGCTGAGTGAACAGCGCATCAAGGGAATCATCCGCGACGCGGTGGACAT 460010 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||||| |||||| | || ||||| ||||| | | || ||| ||| | Sbjct 460009 CGAGAGAGAGTTCGTGTGCGACGCGCTGCCATGTGCGTTGGTGGGAATGAACGGCGAGCT 459950 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACC 60328 |||| |||||||| | || || || ||| | || ||| | | || | || Sbjct 459949 GATGAGCCAGTACATCGAATTCGTGGCCGACAGGCTATTGGGTGCGCTAGGGTACGGGAA 459890 Query 60329 AATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGAC 60388 || ||| ||| | ||||| ||||| ||||||||| |||||||||| |||||||||| Sbjct 459889 GATCTACAACGTCCAGAACCCCTTCGATTGGATGGAGCTCATCTCGTTGCAAGGGAAGAC 459830 Query 60389 CAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||| |||||||||||| | |||||||| || Sbjct 459829 CAATTTCTTTGAGAAGAGAGTCGGGGAGTA 459800 >seq1451 Length=2232081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 |||||||| |||||||||||||||||| | || | ||||| || ||| ||||| || Sbjct 1232420 TTCTGTGCCATTTTCTGGCTCAAAAAGAGGGGAATGATGCCAGGTTTGACGTTCTCAAAT 1232361 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||||||||||| | || |||||||| ||| || ||||| Sbjct 1232360 GAGCTGATTTCTAGAGATGAGGGCCTACATTGTGACTTTGC 1232320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547799355382320