Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq54992 150 2e-31 seq51103 113 5e-20 seq1882 93.3 5e-14 seq54697 91.5 2e-13 seq1195 89.7 6e-13 seq55654 82.4 8e-11 seq1863 82.4 8e-11 seq1382 82.4 8e-11 >seq54992 Length=480207 Score = 150 bits (166), Expect = 2e-31 Identities = 541/822 (66%), Gaps = 38/822 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| | ||| ||||| || ||||||||||||| |||||||||| ||||||| Sbjct 459800 TACTCCCCGACTCTCTTCTCAAAGAAATTGGTCTTCCCTTGCAACGAGATGAGCTCCATC 459859 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC---CCCAAACTGTGCCATGAGG 74579 || ||||| ||||||| | ||| || |||| | ||| | | ||| || Sbjct 459860 CAATCGAAGGGGTTCTGGACGTTGTAGAT---CTTCCCGTACCCTAGCGCACCCAATAGC 459916 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTT-CTCCCGCATCCATGCCGATGAGTTT 74638 | || ||||| |||| |||||||| |||| ||| | | | ||| || | | Sbjct 459917 CTGTCGGCCACGAATTCGATGTACTGGCTCATCAGCTCGC-CGTTCATTCCCACCAACGC 459975 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAAT--- 74695 || ||||| || ||| | ||||| ||||| | || || ||| || Sbjct 459976 ACATGGCAGCGCGTCGCACACGAACTCTCTCTCGATGTCCACCGCGTCGCGGATGATTCC 460035 Query 74696 CTTGTGAATGTCTTTGGAAGGGCA-CTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 |||| ||| | || || ||||| ||| | ||||||||||| | |||| | Sbjct 460036 CTTG---ATG-CGCTGTTCACTCAGCTTTTTTTTCAAGAGAGAGTAAAGCAGGCACG-CG 460090 Query 74754 AACTCCTGATGCGAGCCT-TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 || || || ||||| || |||| |||| || || || || | || || || Sbjct 460091 AAGTCGCAGTG-GAGCCCCTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTCAGACCGGG 460149 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| | || |||||||||||||| |||||||| |||||| || ||||||||| || Sbjct 460150 CATCAAGCCGCGCTTCTTCAACCAGAAGATGGCGCAGAAGCTTCCGGAGAAGAAGATACC 460209 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGG--AAGTC-ATCCA 74929 ||| |||||||| || ||||| | ||| | ||||| | |||| ||| ||||| Sbjct 460210 TTCTACACACGCGAAAGCGACGATGCGCTCAGCGAA---GGACTCGGCCCCGTCGATCCA 460266 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG 74989 | | ||||| | || || ||| |||||| || ||||| || |||||||| Sbjct 460267 GCGCAGGGCCCACTGTGCCTTCTTAGCGACGCAAGGGACGGTCTCGATGGCGTGGAAGAG 460326 Query 74990 GCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGA 75049 || ||||| ||| ||||||| | | || | || ||| |||| |||| || Sbjct 460327 GCGGTGCTTCTGGGCGGAGTCCTTGATGTAGGTCTCGAGCAAAAGACTGTACATCTCGGA 460386 Query 75050 ATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 ||||| |||| || ||| |||| | ||||||| | || ||||| || | ||| | Sbjct 460387 GTGAATATTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGGA 460445 Query 75109 CATCCTT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 | ||||| |||| || ||| |||||||| ||||||||||| |||||||| || Sbjct 460446 CCTCCTTCATGAACCTGCCA--GCGAGATTCTCCAAAACGATGCCGTCAGAGGCGGC-AA 460502 Query 75167 AAAAGCCAGTACCATTTTG---ATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATC 75223 | ||| || | || | | || ||||| ||| ||| || || ||||||| Sbjct 460503 AGAAGGCA--AGGATGTGGGAAATGAAGTGTTTCTCGTCGGGAGAAAGGGATTCCCAATG 460560 Query 75224 CTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 |||||| | | | |||| ||||||| | |||||||| Sbjct 460561 AGAAAGGTCCTCGGAGAGGTCAACCTCCTCGGCGGTCCAGAA 460602 >seq51103 Length=109835 Score = 113 bits (124), Expect = 5e-20 Identities = 267/398 (67%), Gaps = 18/398 (5%) Strand=Plus/Plus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCC 124566 |||||| ||| |||| ||| |||| | || || || | ||||||| ||| | || Sbjct 21014 TGTGCGACTCCTCCGTCGCAACCACGTAGTCGTCCGGCTTGTCTTGCTGCAGCATCATCC 21073 Query 124567 ACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGA 124626 |||| || | ||||||||| | ||| |||||||| | ||| || || || | Sbjct 21074 ACATTGCCTCCACGTAGTCCCCGGCGAATCCCCAGTCCCTGGAGGCGCTGAGATTCCCAA 21133 Query 124627 GCTCGAT-TGGCTT----GGCCG-TCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGC 124680 | || | |||| ||||| ||||| ||| || || || | || ||||| | Sbjct 21134 GGAAGAGCTTGCTTTGGAGGCCGATCTTGATCCGTCCCACCGCACGC---GTGATCTTCC 21190 Query 124681 GCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTAC 124737 |||||| || |||| || || ||| |||||||| ||||| || || ||| | | Sbjct 21191 TCGTCACGAAGTTCTCG---CCCCGCCGCGGCGACTCGTGATTGAAGAGTATCCCATTGC 21247 Query 124738 ACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGG 124797 ||||| | ||||| |||| |||||||||||| ||| ||||| | | | |||| Sbjct 21248 ACGCATATATCCCATACGCCTCGCGGTAGTTCACCGTGTACCAATGCGCGGCGCATTTGG 21307 Query 124798 ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAA 124857 || || | || ||| |||||| | ||| || || ||||| |||| || || | Sbjct 21308 ACGCGGCGTATGGGGATCGGGGATGGAACGGCGTCGTTTCAGACTGGGGAG---GCGGGG 21364 Query 124858 TCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAAT 124895 || ||| ||||||||||||| || ||||| ||| || Sbjct 21365 TCGACCCGAACATCTCCGAAGACCCGGCCTGGTAGTAT 21402 >seq1882 Length=128289 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 23132 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 23191 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 23192 TGAGCTACGAAAGCAA 23207 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 24401 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24460 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 24461 TGAGCTACGAAAGCAA 24476 >seq54697 Length=66131 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 21064 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 21123 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 21124 TGAGCTACGAAAGCA 21138 >seq1195 Length=89214 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 43814 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 43755 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 43754 TGAGCTACGAAAGC 43741 >seq55654 Length=598548 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 583641 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 583582 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 583581 TGAGCTATGAAAGCA 583567 >seq1863 Length=687024 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 206918 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 206859 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 206858 TGAGCTACGAGAGCA 206844 >seq1382 Length=506723 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 501024 TGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 501083 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 501084 TGAGCTATGAAAGCA 501098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546492286319400