Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq47040 150 2e-31 seq54963 140 4e-28 seq2016 113 5e-20 seq55718 84.2 3e-11 >seq47040 Length=8764 Score = 150 bits (166), Expect = 2e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 176497 GTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGT 176556 |||||||| || || || || | || || | | |||||| | |||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 176557 CAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTT 176616 |||||| || ||| | |||| |||||| || ||||| ||||| |||||||| ||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 176617 GTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGT 176676 |||||||| || ||||||||||| || ||||||||||| |||||| | || ||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 176677 GTGTTTGGTGG 176687 || || || || Sbjct 5507 GTATTCGGCGG 5497 >seq54963 Length=251348 Score = 140 bits (154), Expect = 4e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 176497 GTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGT 176556 |||||||| || || || || || || | || ||||| | |||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 176557 CAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTT 176616 |||||| || ||||| ||||||||||| || ||||| ||||| |||||||| ||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 176617 GTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGT 176676 |||||||| || ||||||||||| || ||||||||||| || ||| | | ||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 176677 GTGTTTGGTGGATCTCTTTT 176696 || || || || || || || Sbjct 117373 GTATTCGGCGGCTCCCTATT 117392 >seq2016 Length=232386 Score = 113 bits (124), Expect = 5e-20 Identities = 112/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 176554 GGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATG 176613 ||||||||| || |||||||||||||||| || | ||| |||| ||||| || ||| Sbjct 155473 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATG 155532 Query 176614 TTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCA 176673 |||||||||| || ||||| |||| ||| |||||||||| || ||| | || ||||| Sbjct 155533 ATTGTATTCCAGGCTGAGCAGAACA-TCTTTTGCACCCATTTCACATGTTAGGTGTAGCT 155591 Query 176674 GGTGTGTTTGGTGGATCTCTTTTC 176697 ||||| || |||| || || ||| Sbjct 155592 GGTGTATTCAGTGGCTCCCTCTTC 155615 >seq55718 Length=3676996 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 177014 GGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTC 177073 |||| ||||| |||| |||| |||||||||||| |||||||||| || |||| ||||| Sbjct 2148058 GGGGTGATATTATTAATTGTGCTAACCTTGGTATGAAAGTTATGCATGAACGTAGTGCTC 2148117 Query 177074 ACAACTTCCCACTTGACCTTGCTGCT 177099 | || ||||| || ||| | |||||| Sbjct 2148118 ATAATTTCCCTCTAGACTTAGCTGCT 2148143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602696256024960