Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq1861 266 4e-66 seq47040 141 1e-28 seq55703 134 2e-26 seq54963 129 7e-25 seq1159 129 7e-25 seq55049 104 3e-17 seq55403 100 4e-16 seq2016 96.9 4e-15 seq48926 91.5 2e-13 seq1318 91.5 2e-13 seq1025 86.0 8e-12 >seq1861 Length=68153 Score = 266 bits (294), Expect = 4e-66 Identities = 654/996 (66%), Gaps = 33/996 (3%) Strand=Plus/Plus Query 190796 TTTGATGTGCTTGATGACTGGTTAAAACGTGATAGATTTGTATTCATAGGTTGGTCTGGT 190855 |||||| | | |||||||||||| | || || || || |||||||||| ||| Sbjct 26949 TTTGATATTATGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGT 27008 Query 190856 CTTATATTATTACCATGTGCTTTCCTATCAATTGGTGGTTGGTTCACAGGAACTACATTT 190915 || || | || || ||||| | | | | || |||||||| ||||| || || ||| Sbjct 27009 CTATTACTCTTTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTT 27068 Query 190916 GTTACTAGTTGGTATACACATGGAATTGCATCTTCATACCTTGAAGGAGCAAACTTTTTG 190975 || ||| | ||||||||| ||| | || ||| || | ||||| ||||| || Sbjct 27069 GTAACTTCATAGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCTTA 27128 Query 190976 ACAGCAGCAGTATCCACACCTGGTGATGCTATGGGTCATAGTTTATTATTCTTATGGGGT 191035 || || ||||| || || | | | || | | | || ||| || || |||||||| Sbjct 27129 ACCGCTGCAGTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGT 27188 Query 191036 CCAGAGGCACAAGGTTCATTTGTTCGTTGGTTACAAATTGGTGGACTTTGGAACTTTGTA 191095 ||||| ||||||| ||| | |||||| ||| | ||| | || |||| ||||| Sbjct 27189 CCAGAAACACAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTT 27248 Query 191096 GCACTTCATGGTGTATTTGGTCTCATAGGATTCATGTTACGTCAGTTTGAAATTGCAGGA 191155 || | | ||| || ||||| ||| ||||||| |||||||| |||| || Sbjct 27249 GC-----------TCTCTGGACTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGA 27297 Query 191156 TTGGTGGGTATTAGACCTTACAATGCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCACA 191215 | || | ||||||| ||||| | || || |||||| || || |||| Sbjct 27298 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTT 27357 Query 191216 AGTGTATTCTTAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGA 191275 ||||| | || |||| ||| ||||| |||||||||||| ||| ||||| Sbjct 27358 TTGGTATTGCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGT 27417 Query 191276 GTTGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTACACTCAAC 191335 || ||||| || ||| || |||| || | |||| || || ||| ||| | ||| Sbjct 27418 GTAGCAGCTATATTT-CATTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGAAC 27476 Query 191336 CCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTGCCATTCAT 191395 || || || |||||||| ||||| ||| | | || | || | ||||| | |||||| Sbjct 27477 CCATTTCATATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCAT 27536 Query 191396 GGTGCTACAGTACAGAACACCTTGTATGAGGACTCAAGCATCTATACAGATGGTCAAGTT 191455 |||||||| || | | || || | ||| ||||||| | | | Sbjct 27537 GGTGCTACCTTAGAAAGTACTTTATTTGA------------------AGATGGTGATGGT 27578 Query 191456 CAAAGTACAACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATTCTATGATC 191515 || |||| ||| | || ||| | ||||| || | ||| ||||||||||| ||| || Sbjct 27579 GCAAATACA---TTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 27635 Query 191516 ACTGCAAACAGATTCTGGTCACAGATATTTGGTATTGCATTCTCTAACAAAAGATTTCTA 191575 || || ||| || ||||| || || ||||| || | || || || ||| | | || Sbjct 27636 ACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCAATAAACGTTGGTTA 27695 Query 191576 CACTTCTTGATGTTGTTTGTTCCTGTAATGGGAATGTGGACATCATCAATAGGTATTGTA 191635 || ||| | ||| | ||||| | |||| | | |||| | | || | || Sbjct 27696 CATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTGCTCTTGGAGTAGTC 27755 Query 191636 GGTCTTGCACTTAACTTAAGAGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 191695 ||||| || || ||| || | || ||||| ||||| ||||| || || | |||| |||| Sbjct 27756 GGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAATCCGTGCAGTAGAA 27815 Query 191696 GACCCAGAGTTTGAAACCTTCTATACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 191755 || || || ||||| || ||||| || || || |||||| | ||||||||||| || Sbjct 27816 GATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATGAAGGTATTCATGCT 27875 Query 191756 TGGATGTCTTCAGTAGACCAACCTCATGAGAACTTT 191791 |||||| | ||| || |||||||| |||||| Sbjct 27876 TGGATGGAGGCTCAAGATCAGCCTCATGAAAACTTT 27911 >seq47040 Length=8764 Score = 141 bits (156), Expect = 1e-28 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 190049 GTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGT 190108 ||||| |||||||| || || | || || | | || ||| | | || ||| ||||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 190109 CAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTT 190168 || || || ||| | |||| |||| |||| || || ||||| |||||||||||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 190169 GTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGT 190228 |||||||| || || || || ||||||||||||||||| |||||| ||||||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 190229 ATGTTTGGTGGAGCATTATTCTCTGCAATGCATGGTTCACTTGTAACA 190276 | || || || |||| ||| ||||||||||| ||| |||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC-TTTGGAACA 5461 >seq55703 Length=584859 Score = 134 bits (148), Expect = 2e-26 Identities = 179/246 (73%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 182485 AATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGC 182544 |||||| || | || || || ||| |||| || || || || || ||||||| || Sbjct 248063 AATGTCACATTCAGTAAAGATTTATCATACATGTATAGGGTGTACTTAATGTGTTCGAGC 248004 Query 182545 TTGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGC 182604 || || | ||||||||||||||| | ||||||||||| || ||||| ||| ||||||| Sbjct 248003 CTGCCCCATAGATGTATTAGAAATGATACCTTGGGATGGATGTAAAGCTAAGAAAATTGC 247944 Query 182605 TTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTAC 182664 ||| || || ||||| | || | || || ||||||||||||||| | | ||| || Sbjct 247943 TTCTTCTCCAAGAACAAAAGACTATGCTGGTTGTAAGAGATGTGAATCCATCTATCCAAC 247884 Query 182665 AGACTTTTTAAGTATTCGTGTTTACTTGGGTGCA-GAAACCACAAGAAGCATGGGTCTAG 182723 ||| | | ||| ||| ||||| ||| | ||| ||||| || ||||||| || ||| Sbjct 247883 AGATTACATGAGTGTTCAAGTTTATTTGTG-GCATGAAACAACTCGAAGCATCGGCCTAA 247825 Query 182724 CATATT 182729 | |||| Sbjct 247824 CTTATT 247819 >seq54963 Length=251348 Score = 129 bits (142), Expect = 7e-25 Identities = 166/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 190049 GTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGT 190108 ||||| |||||||| || || || || ||| || || | | || ||| ||||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 190109 CAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTT 190168 || || || ||||| ||||||||| |||| || || ||||| |||||||||||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 190169 GTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGT 190228 |||||||| || || || || ||||||||||||||||| || ||| | ||||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 190229 ATGTTTGGTGGAGCATTATTCTCTGCAATGCATGGTTCACTTGTAACA 190276 | || || || | |||| || ||||||||||| ||| |||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC-TTTGGAACA 117419 >seq1159 Length=117665 Score = 129 bits (142), Expect = 7e-25 Identities = 171/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 186890 TTTGGTATGAATAATCTCTCTGTATGGGCATGGATGTTCTTGTTTGGTCATTTAGTTTGG 186949 ||||||||||||| | | || | |||| ||||||||||| ||||| ||| | ||||| Sbjct 13519 TTTGGTATGAATAGTTTATCAATTTGGGTGTGGATGTTCTTCTTTGGACATCTTGTTTGC 13578 Query 186950 GCAACAGGATTTATGTTCCTTATTTCTTGGAGAGGTTATTGGCAAGAGTTAATTGAGACT 187009 | | |||||||||||| | ||||| |||| || || |||||||| || ||||| ||| Sbjct 13579 ACTATTGGATTTATGTTCTTAATTTCCTGGAATGGATA-TGGCAAGAATTGATTGAAACT 13637 Query 187010 CTTGCTTGGGCACATCAAAGAACTCCAATAGCAAATATAGCAGGTTGGAGAGATAAACCA 187069 | || |||| || || | || || | | ||| | |||||||||||| || Sbjct 13638 TTAGCGTGGGTTCAGGAAGGCACACCTTTGGTTAATTTGATTCAATGGAGAGATAAATCA 13697 Query 187070 GTGGCACTTTCTATTGTTCAAGCAAGACTAGTTGGTTTATCACATTTTGCCATAGG 187125 ||||| ||||| | || ||||||||| | ||||| ||| | | ||| | ||||| Sbjct 13698 GTGGCTCTTTCCAACGTGCAAGCAAGATTGGTTGGATTAGCCCGCTTTTCTATAGG 13753 >seq55049 Length=145700 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 186203 AGAATGCTACAGCACAAAGAAGCAATTATAAGTCACTTAAGTTGGGTATCACTATTCCTT 186262 |||||| || | || || ||||| || ||| || |||||||||| || || | Sbjct 94670 AGAATGTTAGATCATAAGGAAGCTATCATATCCCATTTAAGTTGGGCCAGCCTTTTTTTG 94611 Query 186263 GGATTCCATACTTTAGGAATCTATGTCCATAATGATGTAGTAATGGCATTTGGTCATCCT 186322 |||||||||||||| ||| | ||||| ||||||||||| | | || |||||| ||| Sbjct 94610 GGATTCCATACTTTGGGACTTTATGTTCATAATGATGTCATGCTTGCTTTTGGTACTCCG 94551 Query 186323 GAGAGACAGATATTAATTGAACCTATATTTGC 186354 |||| ||| || || || |||||||||||||| Sbjct 94550 GAGAAACAAATCTTGATCGAACCTATATTTGC 94519 >seq55403 Length=1801586 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 184809 TTGCTTGGGCACATAACAAATTAAAACTTGCACCTACCATTCAACCAAGAGCAATGTCAA 184868 ||| |||||| |||| ||||||||| |||| ||| | | ||| || ||||| || | Sbjct 708960 TTGTTTGGGCTTATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCCAGAGCCTTGAGCA 708901 Query 184869 TTACACAAGGACGTGCTGTTGGAGTTGCACACTTCTTACTTGGAGGTATTGCCACAACAT 184928 || ||||| |||||||| ||||| | || | | | || || || ||||||||||||| Sbjct 708900 TTGTCCAAGGCCGTGCTGTAGGAGTAACTCATTACCTTCTGGGTGGAATTGCCACAACAT 708841 Query 184929 GGGCATTCTTCTT 184941 ||||||||||||| Sbjct 708840 GGGCATTCTTCTT 708828 >seq2016 Length=232386 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 190105 TGGTCAGGGTTCATTCTCTGATGGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCAT 190164 |||||| || || ||||||||||||||| ||| | || |||| ||||| ||||| Sbjct 155472 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCAT 155531 Query 190165 GTTTGTATTCCAAGCAGAACATAATATCCTTATGCACCCATTCCATATGGCAGGTGTAGC 190224 | |||||||||| || || || || || ||| |||||||||| || ||| ||||||||| Sbjct 155532 GATTGTATTCCAGGCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGC 155590 Query 190225 AGGTATGTTTGGTGG 190239 ||| | || |||| Sbjct 155591 TGGTGTATTCAGTGG 155605 >seq48926 Length=32823 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACACGCAGATG---CTCATG 182903 |||| ||||| ||| | || || || || || ||||| |||| | |||| |||| | Sbjct 2459 TAGCTAAAGGGCCTGATACTACTACTTGAATTTGGAACCTACATGTTGATGATGCTCACG 2518 Query 182904 ATTTTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACT 182963 ||||||||| ||| ||||||| || | |||| | ||||| ||||| ||| || | Sbjct 2519 ATTTTGATAGCCATAATAGTGATTTGGAGGAGATATATCGAAAAGTATTTAGTGCCCATT 2578 Query 182964 TTGCTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGT 183023 | | || || |||||||||| | ||| ||| | | | || || |||||| | Sbjct 2579 TCGGACAACTTTCTATCATCTTTCTTTGGCGGAGTGGCATGTATTTCCACGGTGCTCATT 2638 Query 183024 TTTCAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGG 183083 |||| || ||| | |||||| || || ||||| | || | |||| || |||| Sbjct 2639 TTTCCAATTATGAATCATGGTTAAGTGATCCTACTCACATTGGACTTAGTGCCCATGTGG 2698 Query 183084 TTTGGCCTATA 183094 ||||||| ||| Sbjct 2699 TTTGGCCAATA 2709 >seq1318 Length=38552 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACACGCAGATG---CTCATG 182903 |||| ||||| ||| | || || || || || ||||| |||| | |||| |||| | Sbjct 9495 TAGCTAAAGGGCCTGATACTACTACTTGAATTTGGAACCTACATGTTGATGATGCTCACG 9436 Query 182904 ATTTTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACT 182963 ||||||||| ||| ||||||| || | |||| | ||||| ||||| ||| || | Sbjct 9435 ATTTTGATAGCCATAATAGTGATTTGGAGGAGATATATCGAAAAGTATTTAGTGCCCATT 9376 Query 182964 TTGCTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGT 183023 | | || || |||||||||| | ||| ||| | | | || || |||||| | Sbjct 9375 TCGGACAACTTTCTATCATCTTTCTTTGGCGGAGTGGCATGTATTTCCACGGTGCTCATT 9316 Query 183024 TTTCAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGG 183083 |||| || ||| | |||||| || || ||||| | || | |||| || |||| Sbjct 9315 TTTCCAATTATGAATCATGGTTAAGTGATCCTACTCACATTGGACTTAGTGCCCATGTGG 9256 Query 183084 TTTGGCCTATA 183094 ||||||| ||| Sbjct 9255 TTTGGCCAATA 9245 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 182847 TAGCAAAAGGACCTAAAACAACCACATGGATATGGAATTTACACGCAGATG---CTCATG 182903 |||| ||||| ||| | || || || || || ||||| |||| | |||| |||| | Sbjct 31769 TAGCTAAAGGGCCTGATACTACTACTTGAATTTGGAACCTACATGTTGATGATGCTCACG 31710 Query 182904 ATTTTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCTGCACACT 182963 ||||||||| ||| ||||||| || | |||| | ||||| ||||| ||| || | Sbjct 31709 ATTTTGATAGCCATAATAGTGATTTGGAGGAGATATATCGAAAAGTATTTAGTGCCCATT 31650 Query 182964 TTGCTCATCTAGGTATCATCTTTGTATGGATGAGCAGTTTCTTCTTTCAAGGTGCTAGGT 183023 | | || || |||||||||| | ||| ||| | | | || || |||||| | Sbjct 31649 TCGGACAACTTTCTATCATCTTTCTTTGGCGGAGTGGCATGTATTTCCACGGTGCTCATT 31590 Query 183024 TTTCAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGCTCAAGTGG 183083 |||| || ||| | |||||| || || ||||| | || | |||| || |||| Sbjct 31589 TTTCCAATTATGAATCATGGTTAAGTGATCCTACTCACATTGGACTTAGTGCCCATGTGG 31530 Query 183084 TTTGGCCTATA 183094 ||||||| ||| Sbjct 31529 TTTGGCCAATA 31519 >seq1025 Length=2429094 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/150 (73%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 137080 GATCAGTACCTGCTGCTGTGCCTGGTATTGTATTCTTATCTGGTGGATTAAGTGAAGAAG 137139 || |||| || || || || || || ||||| ||||| || |||||| ||| ||||||| Sbjct 2194890 GAACAGTCCCGGCCGCAGTACCGGGGATTGTGTTCTTGTCGGGTGGACAAAGCGAAGAAG 2194949 Query 137140 AAGCATCTCTATATCTAAATGAGATGAATA--TTCTAAGTGTTGATAAACCATGGAATGT 137197 | ||| | | | |||| || | ||||||| || | ||| ||| | ||||||| | Sbjct 2194950 AGGCAACACAAAATCTTAACGCAATGAATAGGTTGGAGGTGCTGA--AGCCATGGACACT 2195007 Query 137198 ATCATTCTCATATGGTAGAGCACTACAACA 137227 ||||||||||| ||| ||||| |||| || Sbjct 2195008 ATCATTCTCATTTGGGCGAGCATTACAGCA 2195037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630592113849480