Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq54143 86.0 6e-12 >seq54143 Length=39111 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| |||||| | || || ||||| ||| ||||||||||| ||||| || | Sbjct 4798 ACATGAGCAATCATGCATGTCAGAAGAGCATAAGATGCAATGTTGAAAGGCACACCAAGG 4857 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 |||||||| | || || ||||| | ||||| |||| || ||||| || ||||| || Sbjct 4858 CCCATGTCAGCAGAGCGCTGATACATTTGGCATGACAATTCACCATTGGCCACGTAAAAC 4917 Query 6737 TG 6738 || Sbjct 4918 TG 4919 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || || ||||| || ||||| || |||| ||||| | ||||| || || | |||||| Sbjct 4919 CAGTTTTACGTGGCCAATGGTGAATTGTCATGCCAAATGTATCAGCGCTCTGCTGACATG 4860 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || | || ||||| ||||||||||| ||| ||||| || || | |||||| |||||| Sbjct 4859 GGCCTTGGTGTGCCTTTCAACATTGCATCTTATGCTCTTCTGACATGCATGATTGCTCAT 4800 Query 34727 GT 34728 || Sbjct 4799 GT 4798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447669556166160