Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1025 98.7 7e-16 seq55116 89.7 4e-13 seq1014 89.7 4e-13 >seq1025 Length=2429094 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| || || | ||||| ||| ||||| | || || || ||| | Sbjct 1182144 AATGCAGATTTTTGTCAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGCTC 1182203 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || || || || |||||||||||| | || || Sbjct 1182204 CGATACCATTGATAAT--GTGAAGGCTAAGATTCAAGACAAAGAAGGTATCCCACCAGAC 1182261 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| |||||||| || || || || || || | ||| | ||| |||||||| Sbjct 1182262 CAGCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAGGATGGACGGACCTTAGCCGATTAC 1182321 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| || |||||||| ||||| |||||||||| || || Sbjct 1182322 AATATTCAAAAGGAATCGACTTTGCACTTGGTGCTGCGTTTGCGAGGAGG 1182371 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | || || ||| ||| || | || || |||||| | Sbjct 1181917 ATGCAAATCTTTGTGAAGACCTTGACGGGAAAAACTATAACCTTGGAAGTTGAAAGCTCG 1181976 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||| || ||||| || ||| | || ||| | Sbjct 1181977 GATACCATAGATAAT--GTCAAGGCAAAGATCCAAGACAAGGAGGGTATCCCACCGGATC 1182034 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || || ||||| || || | | | | || ||||||||| Sbjct 1182035 AGCAGAGGTTGATCTTTGCTGGGAAGCAATTAGAAGATGGAAGGACATTAGCCGATTACA 1182094 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| ||| ||||||||||| | ||| ||||||| || Sbjct 1182095 ACATTCAGAAGGAGTCCACCTTGCATTTGGTGCTTCGTCTGCGTGGAGG 1182143 >seq55116 Length=591887 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||||||||| || || || || | || || ||||| | Sbjct 230197 ATGCAGATTTTTGTTAAAACTCTTACAGGAAAGACAATCACCTTGGAAGTTGAAAGTTCA 230138 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || ||| ||| ||| ||||| |||||| |||| | Sbjct 230137 GAC-----ACAATCGATAATGTGAAAGCAAAGATACAAGACAAGGAAGGTATTCCTCCAG 230083 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| | || || ||||| ||||| || | || || | ||| | ||| | || | Sbjct 230082 ATCAGCAGAGATTGATATTTGCAGGAAAGCAGCTTGAGGATGGACGAACATTGGCTGACT 230023 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||||| ||||||||| ||||| | || | ||||| || Sbjct 230022 ACAATATCCAGAAAGAATCCACTTTGCACTTGGTCCTCCGCCTCCGTGGTGG 229971 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || || ||||| || || || |||| || || ||| | Sbjct 229741 ATGCAGATTTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 229682 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| |||||| |||||| || || || || | || || | Sbjct 229681 GATACGATTGATAAT--GTCAAAGCCAAAATACAGGATAAGGAGGGGATCCCACCAGACC 229624 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| || || ||| | || || | |||| | || | ||||||| Sbjct 229623 AGCAGAGGCTTATTTTTGCTGGGAAGCAACTTGAAGATGGCCGCACCCTGGCAGATTACA 229564 Query 27968 ACATCCAAAAAGAGAGCACTTTGCAT 27993 |||| || |||||||||||| | ||| Sbjct 229563 ACATTCAGAAAGAGAGCACTCTACAT 229538 >seq1014 Length=2264649 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| || || || | ||||| ||| ||||| | || || || || | Sbjct 109278 AATGCAGATTTTCGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTC 109337 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || || ||||| |||||||||||| | || || Sbjct 109338 CGATACTATTGATAAT--GTGAAGGCTAAAATTCAAGACAAAGAAGGTATCCCACCTGAC 109395 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| |||||||| || || || || || || | | | | ||| | |||||| Sbjct 109396 CAGCAGAGGTTGATTTTTGCTGGCAAGCAGTTAGAAGATGGAAGGACCTTAGCAGATTAC 109455 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||| || || |||| ||||| |||||||||||||||| Sbjct 109456 AATATCCAAAAGGAATCGACACTGCACTTGGTGCTGCGTTTGCGTGGCGG 109505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355403524665381