Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq49365 105 6e-18 seq55116 102 7e-17 seq50979 95.1 1e-14 seq1025 84.2 2e-11 >seq49365 Length=33059 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| ||||| |||||||||||||| || ||||| |||| || Sbjct 27654 CACCAGGTGGAGGGTGGACTCCTTTTGGATATTATAATCGGCGAGGGTTCGGCCGTCCTC 27595 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || ||||| | ||||||||| | ||| | || ||| |||||| Sbjct 27594 CAGCTGCTTGCCGGCGAAAATAAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 27535 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| || || | ||| | | | || || ||| |||||| |||| ||||| Sbjct 27534 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGCT---CTCCACCTCCAGGGTGATCG 27479 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || || ||||||||||| Sbjct 27478 TCTTCCCTGTCAAGGTCTTGACGAAGATTTGCAT 27445 >seq55116 Length=591887 Score = 102 bits (112), Expect = 7e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| || ||| | || | |||||| ||||||||||| || || || ||||| || Sbjct 229515 CCACCTCGTAGGCGAAGGACAAGATGTAGAGTGCTCTCTTTCTGAATGTTGTAATCTGCC 229574 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || ||||| || || || ||||| ||||| | ||||||||| |||||| Sbjct 229575 AGGGTGCGGCCATCTTCAAGTTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGG 229634 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTC 39233 | | ||| || ||| ||||| ||||| | | | |||||| ||| ||| Sbjct 229635 -ATCCCCTCCTTATCCTGTATTTTGGCTTTGACATTATCAATCGTATCAGAGCT---CTC 229690 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||| || | ||||| | ||||| || || || || ||||| || |||||| Sbjct 229691 CACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAAATCTGCATC 229742 >seq50979 Length=594689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || ||||| ||| || || ||||| || ||||| || || || |||| || ||||| Sbjct 43793 TGGAGCGTCGACTCCTTCTGGATATTGTAGTCGGCTAGGGTCCGGCCGTCCTCGAGCTGC 43852 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||||| || || || ||||||||||||| ||||||| | || ||| |||||| ||| || Sbjct 43853 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCCTCCTTGTCCTGGATCTT 43911 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | | | | || ||| ||||| || || | |||||| | || || || Sbjct 43912 GGCCTTAACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATAGTCTTCCCGGT 43971 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| |||||||| ||||| Sbjct 43972 TAGGGTTTTGACAAAGATCTGCAT 43995 >seq1025 Length=2429094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || |||||||| ||||| || || || | | | || ||||||||| Sbjct 1182803 TGCAGAGTGGACTCCTTCTGTATATTGTAATCCGCCAGAGTCCTTCCATCTTCAAGCTGT 1182744 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || |||||||| ||||| | |||||| || | || | | ||||||||| ||| | | Sbjct 1182743 TTACCCGCAAAGATAAGCCTCTGCTGATCTGGAGGTATTCCTTCTTTGTCC-TGAATCTT 1182685 Query 39202 TG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || ||| | | | | ||||| ||| || |||| || || | || || || Sbjct 1182684 TGCTTTCACATTATCAATTGTATCAGAACTCTCGACCTCCAAGGTAATGGTCTTCCCAGT 1182625 Query 39261 CAGCGTTTTAACAAAGATTTGCATC 39285 || ||||| |||||||| |||||| Sbjct 1182624 CAATGTTTTCACAAAGATCTGCATC 1182600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428991712090139