Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq50617 152 7e-32 seq54992 118 1e-21 seq1889 116 5e-21 seq1761 104 3e-17 seq51957 91.5 2e-13 >seq50617 Length=115889 Score = 152 bits (168), Expect = 7e-32 Identities = 356/535 (67%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || |||||||| ||||| | || || ||||| | ||| ||||| || | Sbjct 92388 TCGTTGGAGAAGGTGAGACCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGGCGCAG 92329 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || ||| || ||||| || ||||| ||| ||| || ||| | || | ||| || || Sbjct 92328 AAGCTTCCGGAGAAGAAGATCCCTTCGACGCACGCGAAGGCGATGAGACGCTC--CGCAA 92271 Query 48303 CTGGCTTCGTTGTGT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCA 48360 | || || || ||||| || | ||||| | |||||||| ||||| || | Sbjct 92270 AGGACTCCGAGCCGTCGATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGA 92211 Query 48361 TTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTA 48420 || || || |||| ||||| || || |||| ||| || | ||| || || | Sbjct 92210 CGGTCTCGATGGCATGGAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCA 92151 Query 48421 TTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAAC 48480 || ||||||||||| ||||||||||||||||| || || ||||| || ||||| || Sbjct 92150 GCAACAGACTATACATCTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGG 92091 Query 48481 ATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTA 48540 | || || | | ||| |||||| | || | |||| | ||||| || | Sbjct 92090 CGCGGGCCTCGGCAACCTGGACCTCCTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGA 92031 Query 48541 TTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAG 48600 | ||||| ||| ||||| || |||| || || |||||| | ||| |||| || | Sbjct 92030 TGCCATCTGAAGCTGCAAAGAAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGG 91971 Query 48601 TCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATG 48660 | || | ||| | || || | || | || || || || || ||||| || | Sbjct 91970 TGAGGGCTTCCCATTGGCGGAGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAG 91911 Query 48661 ATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 | ||||| ||||| || ||||| | |||||| || ||| ||||| || || || Sbjct 91910 AGGCCTCGGCTTTCTTGTACATCTCCCATATTTCGGGGTACTGGATCGGAAACAT 91856 >seq54992 Length=480207 Score = 118 bits (130), Expect = 1e-21 Identities = 354/541 (65%), Gaps = 14/541 (3%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || || ||||||||||| | || || || || | ||| || || || | Sbjct 460127 TCGTTGGAGAAGGTCAGACCGGGCATCAAGCCGCGCTTCTTCAACCAGAAGATGGCGCAG 460186 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA- 48301 || ||| || ||||| || |||||||| ||| || ||| | | ||| || | Sbjct 460187 AAGCTTCCGGAGAAGAAGATACCTTCTACACACGCGAAAGCGACGATGCGCTCAGCGAAG 460246 Query 48302 -ACT-GGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 ||| ||| ||| | ||||| || | ||||| | |||||||| || ||||| Sbjct 460247 GACTCGGCCCCGTCG---ATCCAGCGCAGGGCCCACTGTGCCTTCTTAGCGACGCAAGGG 460303 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 | || || || || | ||||| || || | | || || | ||| || || Sbjct 460304 ACGGTCTCGATGGCGTGGAAGAGGCGGTGCTTCTGGGCGGAGTCCTTGATGTAGGTCTCG 460363 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 | |||||||| ||||| |||||||||||||| || || || ||||| || ||||| || Sbjct 460364 AGCAAAAGACTGTACATCTCGGAGTGAATATTCTCGATGGCGATCTGGAAGCCGTAGAAG 460423 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 | || || | || ||| |||||| | || | |||| | |||||| || Sbjct 460424 GCGCGGGCCTCGGCGACCTGGACCTCCTTCATGAACCTGCCAGCGAGATTCTCCAAAACG 460483 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAA 48599 || || ||| || ||||| || || | | || ||| || | ||| |||| || | Sbjct 460484 ATGCCGTCAGAGGCGGCAAAGAAGGCAAGGATGTGGGAAATGAAGTGTTTCTCGTCGGGA 460543 Query 48600 GTCAGTTTATTCCAGTCATTGATA----TCTTTTGATATATCTACTTCTTCAGCTGTCCA 48655 | || ||||| || ||| | || | || | || || || || || ||||| Sbjct 460544 GAAAG-GGATTCC---CAATGAGAAAGGTCCTCGGAGAGGTCAACCTCCTCGGCGGTCCA 460599 Query 48656 AAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAAT 48715 ||||| ||||| ||||| || ||||| | |||||| || ||| ||||| ||||| || Sbjct 460600 GAATGAGGCCTCAGCTTTCTTGTACATTTCCCATATTTCCGGGTACTGGATCGGGAACAT 460659 Query 48716 A 48716 | Sbjct 460660 A 460660 >seq1889 Length=778003 Score = 116 bits (128), Expect = 5e-21 Identities = 127/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 |||||||||| || || | |||||||| ||||||||| |||| |||| || || Sbjct 332904 TTTCATATTGGGTGTACAAATTGTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 332963 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 ||||||||||| | ||| ||||| | ||||| | |||| || ||||||||| | Sbjct 332964 CCTCATTTGGGCAAAACAAAGACCATTGTCCATCACCTCGCACTCTTTCCATAAAGAGGT 333023 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATT 78070 |||||||||| |||||| |||||||||||| | | || |||||| || Sbjct 333024 CAGGTATCCAAAGAGCATAAAATAGATCTCGAGCCCGATATTCTTCCTT 333072 >seq1761 Length=289715 Score = 104 bits (114), Expect = 3e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| ||||||||||| | || ||||| ||||| || ||||| | ||| | | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 |||||||| ||||| || || ||||| | |||||||| || || || | |||||| Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||||||||| || ||| | | ||||| | ||| ||| | || | Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGATCTCTCAAG 164889 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACA 78629 ||||| |||||||| || | || |||||||| || || || || ||| Sbjct 164890 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCACA 164941 >seq51957 Length=105213 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||||||||| | || ||||| ||||| || |||||| | ||| | | || Sbjct 19659 GTCCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCATATGA 19600 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| || || || || || || | ||| |||||||| ||||| || | |||||| Sbjct 19599 TATGTTTTGATGGCAGACTCAATATCATCCTTG-TGAATTCCAACCGCGACCCTCATCAA 19541 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| ||||| || ||| | | ||||| | ||| || | || | Sbjct 19540 CATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGACCTCTCAAG 19481 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACA 78629 ||||| |||||||| || | || ||| |||| ||||| || || ||| Sbjct 19480 GGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCGATCGTATATGATTACA 19429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||| |||||||| ||||| | |||||||| || |||||| || |||| || Sbjct 20506 CTCTCCTTCATATTTTGTATACAATTTCTCAAATTCTTCACCCCAACAGTCTGCCAAACC 20447 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA-ACTCGTTTCATAA 78015 || |||||||| || | ||||||||| | |||| | | || |||| || ||| | Sbjct 20446 CGGAGCCTCATTTGGACAAAACAATGACCAATGTCCAT-TACTTTGGACTCTTTCCATGA 20388 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||||| | ||| |||||| ||||||||| || Sbjct 20387 AGAGATCAGGCACCCACAGAGCATAAAATAGATCCCG 20351 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| | || | | |||||||| ||| || Sbjct 20008 CCCCCTTGATCAACATAACGCGCCGTATCATTGAATACACGTAGCATTGGAACAATGCCA 19949 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||| ||| ||||||||||||| | ||||||||||| | || Sbjct 19948 TTGGATGTCCCATTTGTGCCACGAATATAACTTCCAGTAGCGCGAATATTGTGGACAGAG 19889 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||| || || || || | |||||| ||||| || || || ||| Sbjct 19888 ACACCAATTCCACCAGCTGATTTGCTGATAACAGCGCATTCCTTCAAGGTGTCATATATA 19829 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || || || ||||| |||| | ||| || |||||| Sbjct 19828 CCTTCAATGCTATCATCTTGCATGCACACAAGGAAGCAGCTA 19787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693750074461920