Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq50617 125 1e-23 seq1761 122 1e-22 seq1889 111 2e-19 seq51957 100 4e-16 >seq50617 Length=115889 Score = 125 bits (138), Expect = 1e-23 Identities = 350/535 (65%), Gaps = 4/535 (1%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || ||||| |||||||| | || |||||||| | ||| ||||| || | Sbjct 92388 TCGTTGGAGAAGGTGAGACCAGGCATCAACCCGCGCTTTTTCAACCAGAATATGGCGCAG 92329 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA- 46790 || ||| || ||||| || ||||| || |||||| |||| || | ||| | | Sbjct 92328 AAGCTTCCGGAGAAGAAGATCCCTTCGACGCACGCGAAGGCGATGAGACGCTCCGCAAAG 92269 Query 46791 -ACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCA 46849 ||| | | | ||||| | | ||||| | ||||| || ||||| || | Sbjct 92268 GACTCCGAGCCGTCG--ATCCAGCGCAGGGCCCACTGGGCCTTCTTAGCCACACAGGGGA 92211 Query 46850 TTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTA 46909 || || || |||| ||||| || || ||||| ||| || | || || || | Sbjct 92210 CGGTCTCGATGGCATGGAAGAGGCGGTGCTTCTCATCTGAATCCTTGATGTAGGTCTCCA 92151 Query 46910 TTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAAC 46969 || ||||||||||| || || ||||| ||||| || || ||||| || ||||| || Sbjct 92150 GCAACAGACTATACATCTCGGAGTGAATATTTTCGATGGCAATCTGGAAGCCGTAGAAGG 92091 Query 46970 ATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTA 47029 | || || | || ||| ||||| | || | ||| | ||||| || | Sbjct 92090 CGCGGGCCTCGGCAACCTGGACCTCCTTCATGAACCTCCCAGCGAGGTTCTCCAAAACGA 92031 Query 47030 TTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAG 47089 | ||||| ||| ||||| || || | || || |||||| | ||| || |||| | Sbjct 92030 TGCCATCTGAAGCTGCAAAGAAAGCTAGGACGTGGGAAATAAAGTGTTTCTCGTCGGGGG 91971 Query 47090 TCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATG 47149 | || | ||| | || || | || | || || || || || |||||||| | Sbjct 91970 TGAGGGCTTCCCATTGGCGGAGGTCCTGAGAGAGGTCAACCTCCTCGGCAGTCCAGAAAG 91911 Query 47150 ACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 | ||||| ||||| || ||||| | |||||| || | || ||||||||||| || Sbjct 91910 AGGCCTCGGCTTTCTTGTACATCTCCCATATTTCGGGGTACTGGATCGGAAACAT 91856 >seq1761 Length=289715 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | | ||| |||| |||||| Sbjct 164355 CCCCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGTAGCATAGGAACAATGCCA 164414 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||||||||||||||||||| ||||||||| ||| | |||||| || | ||| Sbjct 164415 TTAGATGTACCATTTGTTCCACGAATATAACTGCCAGTGGAACGAATGTTGTGGACAGAA 164474 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| ||| ||| ||| | |||||| ||||| |||||||| ||| Sbjct 164475 ACACCAATTCCTCCAGCCGATTTGCTGATAACAGCACACTCCTTCAAGGTGTCATATATG 164534 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| |||| | ||| || |||||| Sbjct 164535 CCTTCAATGCTATCATCTTTCATACACACAAGGAAGCAGCTA 164576 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| ||||||||||| | || ||||| |||||||||||||| | ||| | | || Sbjct 164710 AGTCCCTGCATTAAAAAGGGTGGGAGACGCATGAGTGAACCACCGCTGAGACATCATATG 164769 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| ||| | | || || || | |||||||| ||||| || | |||||| Sbjct 164770 GTATGTTTTGATAGCAGAATCAATGTCATTCTTGTGAATTCCAACAGCAACCCTCATCAA 164829 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||||| ||||||| ||| | | ||||| | ||| ||| | || | Sbjct 164830 CATGTGTTGAGGTCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGATCTCTCAAG 164889 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAAC 77223 ||||| |||||||| || | || |||||||| || || || || || Sbjct 164890 GGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGATCAC 164940 >seq1889 Length=778003 Score = 111 bits (122), Expect = 2e-19 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 |||||||||| || || || |||||||| ||||||||| |||| ||||||| ||| Sbjct 332904 TTTCATATTGGGTGTACAAATTGTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 332963 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 ||||| || || | ||| ||||| | ||||| | || | || ||||||||| | Sbjct 332964 CCTCATTTGGGCAAAACAAAGACCATTGTCCATCACCTCGCACTCTTTCCATAAAGAGGT 333023 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATT 76665 |||||||||| |||||| |||||||||||| | | | |||||| || Sbjct 333024 CAGGTATCCAAAGAGCATAAAATAGATCTCGAGCCCGATATTCTTCCTT 333072 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||||||||||| | ||||| | |||||||||||||| | ||| | | || Sbjct 333828 AGTTCCTGCATTAAAAAGGGTAGGGGTAGCATGAGTGAACCAACGCTGAGACATCAAATG 333887 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||| | || ||| | || || || || || || || ||||| || | ||| || Sbjct 333888 GTATGTCTTAAGAACAGAGTCCATGTCATCTTTGTGGATACCAACAGCAACTCTCATTAA 333947 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||| ||| ||| || | || || | ||||| | || | Sbjct 333948 CATGTGCTGAGGCCTTTCCACAACCTTCCCATCAACCTTTAAAAGATATGACCTCTCAAG 334007 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTA 77214 |||||| || |||||||| | ||| ||| ||||| || || Sbjct 334008 AGTTTTGAAGCCAAAATAATCGTAGTCAAAATCTCTGTCATA 334049 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 || ||||| ||||||||||| || |||||| ||||| | | | ||||||||||| | | Sbjct 331196 AAAACTCTGCGAGTGTAAATGTTGGAGGTATAAGGTTCAAAACACTCATTGTTTCCAAGA 331255 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCAC 75831 || ||| ||||||||||| ||||||||||| || Sbjct 331256 ATCTGACTGGTTGAAGCAGTGGGCATAGGTGCTAC 331290 >seq51957 Length=105213 Score = 100 bits (110), Expect = 4e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||| |||||||| |||||| || |||||||| || |||||| || ||||||| Sbjct 20506 CTCTCCTTCATATTTTGTATACAATTTCTCAAATTCTTCACCCCAACAGTCTGCCAAACC 20447 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTA-ACCCGTTTCATAA 76610 ||| ||||| ||||| | ||||||||| | |||| | | || || | || ||| | Sbjct 20446 CGGAGCCTCATTTGGACAAAACAATGACCAATGTCCAT-TACTTTGGACTCTTTCCATGA 20388 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||| | ||| |||||| ||||||||| || Sbjct 20387 AGAGATCAGGCACCCACAGAGCATAAAATAGATCCCG 20351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || ||||||||||| | || ||||| ||||||||||||||| | ||| | | || Sbjct 19659 GTCCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCATATGA 19600 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| || | | || ||||| | ||| |||||||| || ||||| | |||||| Sbjct 19599 TATGTTTTGATGGCAGACTCAATATCATCCTTG-TGAATTCCAACCGCGACCCTCATCAA 19541 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||||||| ||| | | ||||| | ||| || | || | Sbjct 19540 CATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAGGACCTCTCAAG 19481 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAAC 77223 ||||| |||||||| || | || ||| |||| ||||| || || || Sbjct 19480 GGTTTTGAAACCAAAGTAATCATAGTCAAAATCTCGATCGTATATGATTAC 19430 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | || || | ||| | || | | |||||||| |||||| Sbjct 20008 CCCCCTTGATCAACATAACGCGCCGTATCATTGAATACACGTAGCATTGGAACAATGCCA 19949 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||| ||| ||||||||||||| || |||||||| | ||| Sbjct 19948 TTGGATGTCCCATTTGTGCCACGAATATAACTTCCAGTAGCGCGAATATTGTGGACAGAG 19889 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || ||| ||| | ||| || ||||| |||||||| || Sbjct 19888 ACACCAATTCCACCAGCTGATTTGCTGATAACAGCGCATTCCTTCAAGGTGTCATATATA 19829 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || |||||||| |||| | ||| || |||||| Sbjct 19828 CCTTCAATGCTATCATCTTGCATGCACACAAGGAAGCAGCTA 19787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711991517520960