Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1861 356 3e-93 seq47040 150 2e-31 seq54963 145 9e-30 seq54898 86.0 8e-12 seq2016 82.4 9e-11 >seq1861 Length=68153 Score = 356 bits (394), Expect = 3e-93 Identities = 663/967 (69%), Gaps = 16/967 (2%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | |||| || || ||||| || ||||| || || | || | Sbjct 26959 TGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCT 27018 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||| ||| | || | || || ||| |||| || ||||| ||||| || | Sbjct 27019 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 27078 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTTTCTCACGGCAGCA 186149 |||||| ||||| |||||| ||| || | || || ||| | || | | || || ||| Sbjct 27079 AGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGCAACTTCT-TAACCGCTGCA 27137 Query 186150 GTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 186209 || || |||| ||| | | | | || ||| | | |||| |||||||| || | Sbjct 27138 GTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACA 27197 Query 186210 CAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 186269 ||||||||| | | | |||| ||| | || | || |||| |||||| || ||| Sbjct 27198 CAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-- 27255 Query 186270 GGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGG 186328 ||| || |||||| ||| | | || |||||||| | ||| ||| | Sbjct 27256 GGA---------CTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAA 27306 Query 186329 TATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATT 186388 | | || || || ||||| || || || |||| ||| || ||| | ||| || ||||| Sbjct 27307 T-TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATT 27365 Query 186389 CCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGC 186448 || || || | || || || || |||||||| | || |||||| || ||||| Sbjct 27366 GCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGC 27425 Query 186449 AATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCA 186508 || ||| |||| | | || || |||| || || || ||||| ||||| ||||| || Sbjct 27426 TATATTTC-ATTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGAACCCATTTCA 27484 Query 186509 CATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTAC 186568 |||||||| || || ||| | |||| | ||||||||| | | || ||||||| ||| Sbjct 27485 TATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTAC 27544 Query 186569 TGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATAC 186628 |||||| |||| | | ||||||||| || ||||| ||||| || || | | Sbjct 27545 CTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAACCC 27604 Query 186629 GACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTT 186688 || |||| |||||||| ||||| |||||||| || ||| || ||||| || ||||| Sbjct 27605 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTT 27664 Query 186689 CGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTAT 186748 || || | ||| |||||| |||||| | |||||| | ||||| ||||| | || | Sbjct 27665 TGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTAAC 27724 Query 186749 GGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGA 186808 || | |||| | | |||| | | ||||| ||||| ||||| ||||| ||||| Sbjct 27725 CAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGA 27784 Query 186809 CTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAA 186868 |||||| |||||| | | |||| ||| |||||||| || ||||| ||||| || || Sbjct 27785 CTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACAAA 27844 Query 186869 GAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGA 186928 ||||| || || ||||||||| | | ||| ||||||| | ||||| || ||||| Sbjct 27845 AAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGA 27904 Query 186929 AAACTTT 186935 ||||||| Sbjct 27905 AAACTTT 27911 >seq47040 Length=8764 Score = 150 bits (166), Expect = 2e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| || |||||||| ||||| || |||| ||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 183640 CAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTT 183699 ||||| ||| | | |||| ||| || || || ||| || || |||| ||| || Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 183700 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGT 183759 || ||||| || |||||||||||||| |||||||| || || ||| | ||||| |||||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 183760 GTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 183802 || ||||| || | || || ||||| ||||| |||||| ||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTCTTTGG 5465 >seq54963 Length=251348 Score = 145 bits (160), Expect = 9e-30 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 183580 GTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGT 183639 ||||| ||| || ||||||| ||||| || ||||| || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 183640 CAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTT 183699 ||||| ||| ||| |||||||| || || || ||| || || |||| ||| || Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 183700 GTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGT 183759 || ||||| || |||||||||||||| |||||||| || |||||| | |||| |||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 183760 GTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGG 183802 || ||||| || || || || |||| ||||| |||||| ||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTCTTTGG 117415 >seq54898 Length=422707 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 170989 CTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGT 171048 |||| ||| || || || ||| | |||||| |||||| |||| ||| ||||| | Sbjct 379499 CTGATGATGCTTACATCCTAGATTCAGCTGAAACTGCAGGAGTTGAGTTGCCTTATTCAT 379558 Query 171049 GTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAAT 171108 | | ||||| ||||| | |||||||||||||| | | | || || || || || | Sbjct 379559 GCAGGGCTGGGGCTTGCTGTACCTGTGCTGGGAAGAAGGTGTCAGGCTCAGTGGACCAGT 379618 Query 171109 CCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCT 171168 | ||| || ||||||||||| | || || || ||||| | ||||| || |||| Sbjct 379619 CTGATGGCTCATTCCTTGATGACAAACAAATGGAGGAAGGTTATGTGCTGACTTGTGTCT 379678 Query 171169 CATATCCTACAAGTGATTGTGTAAT 171193 |||| || || ||| ||||| || Sbjct 379679 CATACCCGACTTCTGACTGTGTGAT 379703 >seq2016 Length=232386 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 183637 GGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATG 183696 |||||||| ||| |||||||||||| | || | | || || || | ||| Sbjct 155473 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATG 155532 Query 183697 CTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCT 183756 |||| ||||| || ||||| ||||| || ||||||| || |||||| | ||||| ||| Sbjct 155533 ATTGTATTCCAGGCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGCT 155591 Query 183757 GGTGTCTTCGGTGGTTCTCTGTTCAGT 183783 ||||| ||| |||| || || |||||| Sbjct 155592 GGTGTATTCAGTGGCTCCCTCTTCAGT 155618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621247688568360