Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1861 430 1e-115 seq47040 163 3e-35 seq54963 150 2e-31 seq2016 86.0 7e-12 >seq1861 Length=68153 Score = 430 bits (476), Expect = 1e-115 Identities = 668/950 (70%), Gaps = 16/950 (2%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 || |||| |||||||||||| || ||||| || || | || ||||| ||| ||| || Sbjct 26976 AGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCTTTCCTTGTGCCTATTTT 27035 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 || | ||||||||| |||| || || || || || || | |||||| |||||| | Sbjct 27036 GCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCATAGTATACACACGGATTG 27095 Query 165300 GCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGA 165358 |||||||||||| | || || ||||| ||| | || || ||||||||||||| || | Sbjct 27096 GCGAGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCTACTCTCGCTAA 27154 Query 165359 CGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCG 165418 | | | || ||| | || | ||||||||||| || | ||||| || || | | Sbjct 27155 TAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACACAAGGAGATTTTACTTG 27214 Query 165419 CTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTAT 165478 ||||| ||| | || | || ||||||||||| || ||| || ||| || Sbjct 27215 TTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTC-----------TGGACTAAT 27263 Query 165479 AGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATG 165537 |||| ||| | | || |||||||||| || ||| || || | | || ||||| |||| Sbjct 27264 AGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATG 27322 Query 165538 CTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGG 165597 | || || ||||||| ||| |||||| | || || || || || || |||| || | Sbjct 27323 CAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATTGCTGATTTATCTACTAG 27382 Query 165598 GACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGC 165657 | |||||| |||||||| | || || || || ||||| || || | |||| | | Sbjct 27383 GTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGCTATATTTC-ATTCTTTC 27441 Query 165658 TCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAG 165717 |||| || ||||||| ||||| ||||| |||| || ||||| |||||||| || || | Sbjct 27442 TCTTTTTCTAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGGGTTGCTG 27501 Query 165718 GTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGT 165777 || | | |||| || |||| | | |||||||||| ||| |||| | |||||| | Sbjct 27502 GTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTACCTTAGAAAGTACTTTAT 27561 Query 165778 ATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAA 165837 |||||||||||| ||||| || || || ||| | ||||| | || |||| Sbjct 27562 TTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAACCCAACTCAAGCTGAAGAAA 27621 Query 165838 CTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCA 165897 ||||||| |||||||| ||||||| || ||||| || || ||||| || |||| || Sbjct 27622 CTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGGGGTTACTTTTTCCA 27681 Query 165898 ATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTT 165957 |||| |||||| | || ||| ||||||| ||||| | || | | | |||| ||| Sbjct 27682 ATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTAACCAGTTTATGGATGAGTG 27741 Query 165958 CTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGA 166017 || |||| | | ||||| || || || || ||||| ||||| ||||| |||||||| | Sbjct 27742 CTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGACTTTGTTTCTCAGGAAA 27801 Query 166018 TTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAATG 166077 | | || | || ||||| || ||||| || ||||| || ||||| || || | |||| Sbjct 27802 TCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAATG 27861 Query 166078 AAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTT 166127 |||| | | ||| ||| ||| || ||| || |||||||| |||||| Sbjct 27862 AAGGTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGAAAACTTT 27911 >seq47040 Length=8764 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 164312 GTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGT 164371 || ||||| || |||||||| || || || | | | || ||| || ||||||| | ||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 164372 CAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTG 164431 ||||| || ||| | | | |||||| || || ||||| || ||||||| |||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 164432 GTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGT 164491 || ||||||||||||||||||||||| |||||||| || |||||| | || ||||| ||| Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 164492 GTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTC 164529 || || ||||| | || || ||||| ||||| ||||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGTTC 5470 >seq54963 Length=251348 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 164312 GTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGT 164371 || ||||| || |||||||| | || || | ||| || || || ||||||| | ||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 164372 CAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTG 164431 ||||| || ||||| | |||||||| || || ||||| || ||||||| |||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 164432 GTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGT 164491 || ||||||||||||||||||||||| |||||||| || || ||| | | ||| ||| Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 164492 GTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTC 164529 || || ||||| || || || |||| ||||| ||||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGTTC 117410 >seq2016 Length=232386 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 164369 GGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATG 164428 |||||||| || ||||||| ||||||| || | || | || ||||| | |||| Sbjct 155473 GGTCAAGGAAGCTTTTCTGATGGTATGCCTCCAGGAAGTTCGCGTACTTTCAAGTTCATG 155532 Query 164429 TTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCA 164488 | || |||||||||||||| ||||| || ||||||| || || ||| | || ||||| Sbjct 155533 ATTGTATTCCAGGCTGAGCAGAACAT-CTTTTGCACCCATTTCACATGTTAGGTGTAGCT 155591 Query 164489 GGTGTGTTTGGCGGTTCTCTGTTCAGT 164515 ||||| || | || || || |||||| Sbjct 155592 GGTGTATTCAGTGGCTCCCTCTTCAGT 155618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556916881143960