Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Juglans_20regia_20[refseq_20GCF_5F001411555.1_202015-10-22] 105,803 sequences; 699,672,627 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1861 383 2e-101 seq47040 141 1e-28 seq54963 138 1e-27 >seq1861 Length=68153 Score = 383 bits (424), Expect = 2e-101 Identities = 669/967 (69%), Gaps = 16/967 (2%) Strand=Plus/Plus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 ||||||||||| | | || | || || ||||| || ||||| || || | || | Sbjct 26959 TGGATGACTGGTTACGGAGGGACCATTTCGTTTTTGTAGGTTGGTCCGGTCTATTACTCT 27018 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||| ||| |||| | || || ||| |||| || || || ||||| || | Sbjct 27019 TTCCTTGTGCCTATTTTGCCTTAGGGGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 27078 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCT 170783 ||| || |||||| | || ||||| || | ||||| ||| || ||| | || || || Sbjct 27079 AGTATACACACGGATTGGCGAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCA 27137 Query 170784 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 170843 || || || | ||| || | | | || ||| | | |||| |||||||| || | Sbjct 27138 GTTTCTACTCTCGCTAATAGTTTAGCACACTCTTTGTTGTTACTATGGGGTCCAGAAACA 27197 Query 170844 CAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 170903 || || ||||| | |||| ||| | || | || |||| |||||| || ||| Sbjct 27198 CAAGGAGATTTTACTTGTTGGTGTCAATTAGGTAGTCTGTGGACTTTTGTTGCTCTCT-- 27255 Query 170904 GGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGG 170962 ||| || |||||| ||| | | || |||||||| | ||| ||| || Sbjct 27256 GGA---------CTAATAGGTCTCACGTTACGTTAGTTTGAACTTGCTCGATCT-GTTCA 27305 Query 170963 GATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTT 171022 | |||| || ||||||||||| ||||||| ||| || ||| | ||| | || || Sbjct 27306 ATTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTTTTTTTTTTTTGGTATT 27365 Query 171023 CCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGC 171082 || || |||| || || || || |||||||||| | ||| |||||| || ||||| Sbjct 27366 GCTGATTTATCTACTAGGTCAATCGGGTTGGTTCTTTGTGCCTAGCTTTGGTGTAGCAGC 27425 Query 171083 AATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCA 171142 || || | ||| | ||||| | |||| || || || |||||| |||| |||||||| Sbjct 27426 TATATTTCA-TTCTTTCTCTTTTTCTAAGGGTTTCATAATTGGACATTGAACCCATTTCA 27484 Query 171143 TATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTAC 171202 ||||||||| ||||| ||| | | |||| ||| |||| | | |||||||||| ||| Sbjct 27485 TATGATGGGGGTTGCTGGTGTAATTGGCGCTGCTCTGCTATGCGTTATTCATGGTGCTAC 27544 Query 171203 AGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACAC 171262 |||| | |||||| | ||||||||||||| ||||| || ||| || ||| || | Sbjct 27545 CTTAGAAAGTACTTTATTTGAAGATGGTGATGGTGCAAATACATTTTGTGCTTTTAACCC 27604 Query 171263 GACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTT 171322 ||||| | ||||| || ||||| |||||||| ||||| | || ||||| || || || Sbjct 27605 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTT 27664 Query 171323 TGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCAT 171382 ||| | | || |||||| |||||||| |||||| ||||||| ||||| | || | Sbjct 27665 TGGGGTTACTTTTTCCAATAAACGTTGGTTACATTTCCTTATGCTATTTGTACTAGTAAC 27724 Query 171383 GGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGA 171442 || | ||| | ||| ||| || | | ||||| ||||| || || | || ||||| Sbjct 27725 CAGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAACCTACGTGCCTATGA 27784 Query 171443 TTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAA 171502 || || |||||| || | |||| ||||||||| || || ||||| ||||| || || Sbjct 27785 CTTTGTTTCTCAGGAAATCCGTGCAGTAGAAGATCCTGAATTTGAGACTTTCTACACAAA 27844 Query 171503 GAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGA 171562 || || || || ||||||||| ||| ||| ||||||| | ||| || || ||||| Sbjct 27845 AAATATTCTTTTAAATGAAGGTATTCATGCTTGGATGGAGGCTCAAGATCAGCCTCATGA 27904 Query 171563 AAACTTT 171569 ||||||| Sbjct 27905 AAACTTT 27911 >seq47040 Length=8764 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 169736 GTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGG 169795 ||||| || || ||||| ||||| || || | |||||||| || |||| || |||| Sbjct 5687 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTACTGTTTTCTTGATCTATCCAATTGGT 5628 Query 169796 CAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTG 169855 ||||| || ||| ||| || |||||| || || || || || || |||| |||| | Sbjct 5627 CAAGGAAGCTTTTCTCACGGTAAGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 5568 Query 169856 GTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGA 169915 || ||||| ||||||||||||||||| |||||||| || || ||| | ||||| || || Sbjct 5567 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCATATGTTAGGTGTAGCTGGT 5508 Query 169916 GTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || || || || | || ||||| || ||||| ||| Sbjct 5507 GTATTCGGCGGCTTCCTATTTAGTGCTATGCATGGT 5472 >seq54963 Length=251348 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 169736 GTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGG 169795 ||||| || || ||||| |||| || || | |||||||| || |||| || |||| Sbjct 117193 GTTGCATATTCAGCTCCTGTTGTAGCTGCTACTGCTGTTTTATTGATCTATCCAATTGGT 117252 Query 169796 CAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTG 169855 ||||| || ||||||| ||||||||| || || || || || || |||| |||| | Sbjct 117253 CAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATT 117312 Query 169856 GTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGA 169915 || ||||| ||||||||||||||||| |||||||| || |||||| | |||| || Sbjct 117313 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTACGTGTAATTGGT 117372 Query 169916 GTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || || || || || || ||||| | ||||| ||| Sbjct 117373 GTATTCGGCGGCTCCCTATTTAGTGTTATGCATGGT 117408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591415195408560