Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq48246 140 7e-28 seq26422 102 2e-16 seq610420 100 6e-16 seq193527 100 6e-16 seq506866 98.7 2e-15 seq504892 98.7 2e-15 seq382028 98.7 2e-15 seq367520 98.7 2e-15 seq367095 98.7 2e-15 seq157899 98.7 2e-15 seq83058 98.7 2e-15 seq60711 98.7 2e-15 seq53563 98.7 2e-15 seq35033 98.7 2e-15 seq12273 98.7 2e-15 seq2205 98.7 2e-15 seq198910 95.1 3e-14 seq50287 93.3 9e-14 seq4166 84.2 5e-11 >seq48246 Length=4099 Score = 140 bits (154), Expect = 7e-28 Identities = 352/524 (67%), Gaps = 16/524 (3%) Strand=Plus/Minus Query 230122 GTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAAC-CTGGTAAATCGTTTGCCGA 230180 ||| | || || || || ||||||| |||||| | || || | | | ||||||| || Sbjct 1788 GTTGAGAAGAAAGCGAATTGGGCTCTCAAATGGATCGATGGCTCGGAGA-CGTTTGCAGA 1730 Query 230181 GCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCAT 230240 |||| | |||| | | || |||||||| ||| | |||||||| || |||||||| || Sbjct 1729 GCGTATTATCGCTTTCGCTTGCGTTGAAGGGATTTTCTTTTCCGGAAGCTTCTGCGCGAT 1670 Query 230241 CTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAACGAGTTCAT 230297 |||||| || || ||| ||| |||||||||| | | || ||||| || || Sbjct 1669 TTTTTGGTTG---AAGAAACGTGGGTTGATGCCTGGATTAACCTTCTCGAACGAATTAAT 1613 Query 230298 CAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATTCAAAGCTCCAGA 230356 | || || ||||| | || | || | || | || | ||| || ||| Sbjct 1612 CTCGCGAGATGAGGGATTACACTGTGATTTTG-CGTGTTTGCTTTATGGGTTACTGAAGA 1554 Query 230357 ACAAGCTACCATTCGAG--ACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAA 230413 ||||| | | ||| ||| ||||| |||| | | || || || || | |||| Sbjct 1553 CGAAGCTG--AGT-GAGGAACGAGTCAAGGGAATCGTCTCCGATGCGGTGGAGATTGAAA 1497 Query 230414 AGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATGG 230473 |||||| | || || || | || ||| ||| | || ||||||| || || ||| Sbjct 1496 GAGAGTTCGTCTGCGATGCCTTACCTTGTGCTCTTGTAGGGATGAACGGGGATCTGATGA 1437 Query 230474 GACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGT 230533 | | |||||||||||||| || || | | || | |||| | || || | |||| ||| Sbjct 1436 GTGAATACATCGAATTCGTTGCTGATAGGTTATTGGGTGCATTGGGATATGGGAAATTGT 1377 Query 230534 ACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACT 230593 |||| | ||||||| |||| | ||||| || |||||| | || ||||||||||| | Sbjct 1376 ACAATGCCCAGAACCCGTTTGATTGGATGGAACTGATTTCGTTACAGGGGAAGACCAATT 1317 Query 230594 TCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||||||| || | || |||| ||||||| || ||||||| Sbjct 1316 TCTTCGAGAAAAGGGTTGGTGAGTATCAGAAAGCTTCTGTGATG 1273 >seq26422 Length=5277 Score = 102 bits (112), Expect = 2e-16 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 165696 GACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGG 165755 || ||||||| |||||||||||||||| |||||||||| || || |||| || |||| Sbjct 245 GAATTAAAACAAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGG 186 Query 165756 TCGTGGGTTCGAGCCCCACGATGGGC 165781 |||||||||||||||||||| ||||| Sbjct 185 TCGTGGGTTCGAGCCCCACGGTGGGC 160 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 373 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 314 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 313 CCCACGGTGGGC 302 >seq610420 Length=468 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 330 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 389 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 390 CCCCACGTTGGGC 402 >seq193527 Length=1686 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || |||||||||||||||| |||||||||| || || |||| || ||||||||||||||| Sbjct 893 CTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 952 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 953 AGCCCCACGGTGGGC 967 >seq506866 Length=595 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 49 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 108 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 109 CCCACGGTGGGC 120 >seq504892 Length=598 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 517 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 576 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 577 CCCACGGTGGGC 588 >seq382028 Length=844 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 773 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 832 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 833 CCCACGGTGGGC 844 >seq367520 Length=883 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 883 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 824 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 823 CCCACGGTGGGC 812 >seq367095 Length=884 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 470 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 411 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 410 CCCACGGTGGGC 399 >seq157899 Length=1993 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1536 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1477 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1476 CCCACGGTGGGC 1465 >seq83058 Length=3081 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1755 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1696 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1695 CCCACGGTGGGC 1684 >seq60711 Length=3661 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 3473 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3532 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3533 CCCACGGTGGGC 3544 >seq53563 Length=3899 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2066 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2007 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2006 CCCACGGTGGGC 1995 >seq35033 Length=4717 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 4500 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4441 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 4440 CCCACGGTGGGC 4429 >seq12273 Length=6818 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 330 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 271 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 270 CCCACGGTGGGC 259 >seq2205 Length=10477 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 2459 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2400 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2399 CCCACGGTGGGC 2388 >seq198910 Length=1646 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1646 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1587 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 1586 CCCACTGTGGGC 1575 >seq50287 Length=4021 Score = 93.3 bits (102), Expect = 9e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 165713 CGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 ||||||||||||| |||||||||| || || |||| || ||||||||||||||||||||| Sbjct 1 CGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 60 Query 165773 ACGATGGGC 165781 ||| ||||| Sbjct 61 ACGGTGGGC 69 >seq4166 Length=9101 Score = 84.2 bits (92), Expect = 5e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 165703 AACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGG 165762 ||| |||||| ||||||||||| |||||||||| | ||||||| | ||||||||||| Sbjct 5862 AACACTTGCCGTTCTAGCTCAGTTGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGG 5921 Query 165763 TTCGAGCCCCAC-GATGG 165779 |||||| ||||| ||||| Sbjct 5922 TTCGAGTCCCACGGATGG 5939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1045949757009300