Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq48246 161 1e-34 >seq48246 Length=4099 Score = 161 bits (178), Expect = 1e-34 Identities = 388/582 (67%), Gaps = 9/582 (2%) Strand=Plus/Plus Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 || ||| || ||||| || ||||||||||| |||| ||| | |||||| || || || Sbjct 1573 CAAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGT 1632 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 || || |||||| || |||||||| |||||||| |||||| ||| || ||||| Sbjct 1633 TAATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAA 1692 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| || || || ||| | || || ||||| | || || || ||||| || | Sbjct 1693 GAAAATCCCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGTC---TCCGAGCC 1749 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||||| | |||| | ||||| | || | || || || || || || Sbjct 1750 ATCGATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGC 1809 Query 17200 CTTAAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGT 17258 || | | | ||||| | ||| ||| |||| || | || | || | |||| Sbjct 1810 TCGGAAGAGTCT-GCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGT 1868 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 |||| |||||||| || ||||| ||||| ||||| |||||||| ||| || || |||| Sbjct 1869 ACATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCG 1928 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 | | |||||| || ||||||| | ||||| ||||| |||||||| ||| | Sbjct 1929 CAACTTGAACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGG 1988 Query 17379 CGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG-- 17436 ||||||| || || | | || | || || | | ||| | || | |||| | Sbjct 1989 CGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGCCTCTCG--CCGTCTGTCAACGAGTC 2046 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 ||||| | ||||| || | ||| || ||||||| |||||||| ||| | || Sbjct 2047 CCAGTGACGTTGATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGC 2106 Query 17497 CTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || ||||| | |||||| | | ||| || || ||||| Sbjct 2107 TTTCTTGTACATTTCCCAAATTTGAGGGTACTGAATTGGGAA 2148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511877764054800