Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq107321 141 9e-29 seq119719 87.8 2e-12 >seq107321 Length=2628 Score = 141 bits (156), Expect = 9e-29 Identities = 398/599 (66%), Gaps = 19/599 (3%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 ||||||||||| || || | || ||||||| ||| | |||||| || || |||| | Sbjct 1294 CACGCGAAGTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGC 1235 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGA 16319 |||||||| |||||||| || | ||||||||| ||||| || || || || |||| Sbjct 1234 CCTGGCATAAGCCCTCGTTTTTTGAGCCAGAATATGGCGCAGAAACTG--CCGGAGAAGA 1177 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTAC 16379 | ||||| || || | || |||||||| | ||||| ||| | || || | || | Sbjct 1176 AGATACCTTCGACGCAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGATCCAT--C 1119 Query 16380 GAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCT 16439 | |||||| | | |||||| ||||| | | || ||| || || || || || Sbjct 1118 G-ATCCATCTGAGGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGC 1060 Query 16440 TAAACA-ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTAC 16498 ||||| | ||||| | || | || | || || | || | || | ||||||| Sbjct 1059 GAAACAGCCTACTCTTCTCGTTGGA-GTCTTTGATGTATGATTCGAGAAGCAGACTGTAC 1001 Query 16499 ATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCT 16558 || || ||||| |||||||| || || ||||| ||||| |||||| || |||||||| Sbjct 1000 ATCTCGGAGTGGATGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCA 941 Query 16559 ATTTGTA---CTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTT 16615 | ||| | ||| || | || ||| | || ||||| || ||||| || || Sbjct 940 ACTTGGACCTCTTTCATG---AACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAG 884 Query 16616 GCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGC 16675 || || || || || | | ||| | ||||| || | ||| || | || | | | Sbjct 883 GCGGCGAAGAATGCGAGGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTCC 824 Query 16676 CAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCC 16735 || | || | || | ||| || || || | ||||||||| ||| |||| Sbjct 823 CACTGACGCTGGTCCTGTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCT 764 Query 16736 TTTTTATACATTTTCCAAATATCATTGTATTGTA-TGGGAA-ATACGACGTATCTATCT 16792 ||||| ||||||| ||| || | | |||||| | |||||| |||| | |||||||| Sbjct 763 TTTTTGTACATTTCCCAGATCTGAGGGTATTGGATTGGGAACATAC--AGAATCTATCT 707 >seq119719 Length=2442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||| || ||||| |||||||| || |||||||| ||||||| || || ||||| Sbjct 197 AGACAAGCAAAGTCACAATGTAGACCCTCGTCTCTAGATATAAGTTTATTTGAGAAAGTC 138 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296 |||||||||||| ||| | ||||||||||| ||||| Sbjct 137 AACCCTGGCATTAATCCCCTCTTCTTTAACCAAAATAT 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505813709125200