Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3554 93.3 3e-14 seq26287 84.2 2e-11 >seq3554 Length=9431 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||| |||||||||||||| || | | ||| ||| |||||||| || || || | Sbjct 3407 ACATGTGCAATCATGCAAGTCAACAACGCATATGAAGCTATGTTAAACGGAACACCAAGT 3348 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 ||||| ||||||||||| ||||||| |||||| || | || ||| ||| |||||||| Sbjct 3347 CCCATGTCAGCTGATCTCTGATACATTTGACAAGATAACTCTCCTTCATTTACATAAAA 3289 >seq26287 Length=5287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 101756 ACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAAC 101815 ||||| |||||||||||||| || | | ||| || ||||||||||| || || | Sbjct 1392 ACATGGGCAATCATGCAAGTCAACAAGGCATATGATGCTATGTTAAATGGAACACCAAGG 1451 Query 101816 CCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAA 101874 ||||| |||||||||| ||||||| |||||| || | || ||| | | |||||||| Sbjct 1452 CCCATGTCAGCTGATCGCTGATACATTTGACAAGATAACTCTCCTTGATTTACATAAAA 1510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357393907573610