Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq48246 161 1e-34 seq6274 134 2e-26 seq23164 122 1e-22 >seq48246 Length=4099 Score = 161 bits (178), Expect = 1e-34 Identities = 411/615 (67%), Gaps = 18/615 (3%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 |||||| || ||||| ||||||| ||||| |||| ||||||||||| || || || Sbjct 1573 CAAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGT 1632 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 | ||| ||||| | ||||| || || | |||||| || | |||| || ||| |||| Sbjct 1633 TAATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCG-CGCAGAAGCTTCCGGAAA 1691 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC--CGGCGCTGTC 24307 ||||||| ||||| || || || || |||| | ||| || ||| | || | | Sbjct 1692 AGAAAATCCCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCA-AACGTCTCCG-AGCC 1749 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 || ||||| || ||||||||| || ||||| | ||||| || || ||||| || || Sbjct 1750 ATCGATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGC 1809 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAAT-CAAAAG---AC 24423 ||||| | |||| |||||| || || |||||| | | || ||| || Sbjct 1810 TCGGAAGAGTCTGCTTTTCTCATTAGAGTCCTT----TATGTAGGATTCCAGAAGCAAAC 1865 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 | ||||| || || || || || || ||||| || || ||||||||||| | |||| Sbjct 1866 TGTACATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCT 1925 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | | || || || ||| | |||||| | |||| ||||| || || || || Sbjct 1926 CCGCAACTTGAACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGG 1985 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603 ||| || || || || | || || | ||||| | | ||| | ||| | | Sbjct 1986 AGGCGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGT 2045 Query 24604 TCCAAT--CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 24661 ||| | | ||| ||||| ||| | ||| || ||||| |||||||||| || || || Sbjct 2046 CCCAGTGACGTTG--ATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTC 2103 Query 24662 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 24721 || || || ||||| | ||| || | | | || |||||||| || ||| || | || Sbjct 2104 GGCTTTCTTGTACATTTCCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATC 2163 Query 24722 TGGATTTTTTGCAAG 24736 ||| ||| ||||| Sbjct 2164 TGGGTTTGGAGCAAG 2178 >seq6274 Length=8207 Score = 134 bits (148), Expect = 2e-26 Identities = 209/297 (70%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 ||| || ||| | | ||||||| |||||| |||||||| || | | || | || Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGC---AAATGCA-- 4879 Query 54175 CCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 54229 || ||| ||| ||||| || || | |||| ||| |||| |||| | || | |||| Sbjct 4880 CCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAAC 4939 Query 54230 ATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGA 54289 ||||||||||||||||| |||| ||||| || || || || |||||| | || | Sbjct 4940 ATTGGAATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTG 4999 Query 54290 ATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 54349 |||||| | || | ||| || |||||||| ||| ||| | || ||| |||| Sbjct 5000 ATATTATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTT 5059 Query 54350 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || |||||||||||||| || || |||||||| ||||| | || ||||||||| Sbjct 5060 AAAGTATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 >seq23164 Length=5532 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| ||||| || || || |||||| ||| || | || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || |||| |||| | || || ||||| | ||||||||| || || || | ||||||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 || || |||||||||||||| | | | | || |||| | || ||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||||| ||||||||||| | || |||||| || || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||| || || | || | || || | |||| | || | ||||||||||| ||||||| Sbjct 1868 CCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACCA 1809 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| || || || ||||||||| | |||||||||||| ||| || Sbjct 1808 TTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGAC 1749 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGAT 54363 | || || || |||| | | || | | |||| || ||| ||||| || ||||| || Sbjct 1748 ACTCCAATTCCTCCTG-CTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATAT 1690 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 | || || || ||||| ||||| || | ||||||||| Sbjct 1689 AGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587219532112800