Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq40887 91.5 1e-13 seq27206 87.8 2e-12 >seq40887 Length=4418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| ||| |||||||| |||||||| || || || || || ||| Sbjct 1938 GACAAGGAAGGGATTCCCCCAGACCAACAAAGGCTTATCTTCGCCGGAAAGCAGCTAGAA 1997 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | || ||||||||||||| || || |||||||| ||||||||| | || | Sbjct 1998 GACGGCCGCACCTTGGCCGATTACAACATCCAAAAGGAATCAACTCTTCACCTCGTTCTT 2057 Query 29175 CGATTACGAGGAGGG 29189 ||||| |||||||| Sbjct 2058 CGATTGAGAGGAGGG 2072 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || | || || ||||| || ||| ||| |||| | | Sbjct 2301 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACAATCACCTTGGAAGTGGAAAGCTCC 2360 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || ||||| || ||||||||| | ||| |||||| Sbjct 2361 GACACAATCGACAATGTCAAAGCTAAAATACAAGACAAAGAAGGTATTCCCCCAGATCAG 2420 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| |||||||||| || || ||||| || |||||| | || | || || ||||| Sbjct 2421 CAACGACTTATCTTCGCCGGAAAACAGCTTGAAGATGGCCGGACCTTAGCTGACTACAAC 2480 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || ||||||||||| || || || Sbjct 2481 ATCCAGAAGGAATCCACCCTCCA 2503 >seq27206 Length=5223 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || ||||||| | || ||||| ||||||||| ||| || | Sbjct 3285 ATGCAGATCTTTGTCAAAACCCTCACCGGCAAGACCATTACCTTGGAAGTCGAGAGTTCT 3226 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | |||| ||| || ||||| ||||| | ||| ||||| Sbjct 3225 GATACAATCGACAACGTTAAAGCAAAGATCCAGGATAAGGAAGGGATCCCCCCTGATCAG 3166 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| || || || || || ||||| ||||||| || ||| | || ||||||||| Sbjct 3165 CAAAGGCTCATATTCGCCGGGAAACAGTTGGAAGACGGCAGAACCCTAGCGGATTACAAT 3106 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||||| |||||||| Sbjct 3105 ATTCAGAAGGAATCGACTCTTCA 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423762403542050