Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq57017 98.7 8e-16 seq40887 95.1 1e-14 seq27206 86.0 5e-12 >seq57017 Length=3783 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAA--CGGAACCCG 25092 ||||| || ||||||||||| | || ||||| |||||||| || | || || Sbjct 1286 ATGCAGATCTTCATCAAAACCCTCACCGGCAAGACCATTACGTTGGAGGTCCAGAGTCC- 1228 Query 25093 CAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152 ||| || | | | | ||||| || ||| ||| || |||||| | || |||| Sbjct 1227 -AGATACCATCGACAAAGTCAAGGCCAAGATTCACGACAAGGAAGGTATTCCTCCTGATC 1169 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212 | ||||| ||||| || || || || || |||||||| |||||| || | || |||| Sbjct 1168 AGCAAAGGCTTATTTTCGCCGGAAAGCAGTTGGAAGAAGGCAAAACCCTGTCGGACTACA 1109 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||||||||||||| ||| ||||| | || | || | ||||| ||| Sbjct 1108 ATATTCAAAAGGAATCCACTGTTCACCTCGTCCTTCGTCTCCGAGGTGGG 1059 >seq40887 Length=4418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 25111 TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 25170 ||||| |||||| || || ||||| | ||| ||| |||||||| |||||||| | Sbjct 1921 TCAAGGCAAAAATCCAGGACAAGGAAGGGATTCCCCCAGACCAACAAAGGCTTATCTTCG 1980 Query 25171 CGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTA 25230 | || || || | ||||| | || ||||||||||||| || ||||||||||| | Sbjct 1981 CCGGAAAGCAGCTAGAAGACGGCCGCACCTTGGCCGATTACAACATCCAAAAGGAATCAA 2040 Query 25231 CTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||||| | || | ||||| |||||||| Sbjct 2041 CTCTTCACCTCGTTCTTCGATTGAGAGGAGGG 2072 >seq27206 Length=5223 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | ||| ||||| ||||| || || || || || ||||| |||||| Sbjct 3192 GATAAGGAAGGGATCCCCCCTGATCAGCAAAGGCTCATATTCGCCGGGAAACAGTTGGAA 3133 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 || || ||| | || |||||||||||||| |||||||| |||||||| Sbjct 3132 GACGGCAGAACCCTAGCGGATTACAATATTCAGAAGGAATCGACTCTTCA 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406410479939540