Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq27206 127 2e-24 seq566467 113 5e-20 seq75854 113 5e-20 seq445472 107 2e-18 seq90807 104 3e-17 seq90319 100 3e-16 seq649280 96.9 4e-15 seq102355 95.1 1e-14 seq50039 93.3 5e-14 seq40887 93.3 5e-14 seq48514 89.7 6e-13 seq35420 89.7 6e-13 seq107820 84.2 2e-11 >seq27206 Length=5223 Score = 127 bits (140), Expect = 2e-24 Identities = 169/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||||| || | ||||| ||| ||||||||||||||||||||||||| Sbjct 2603 CCACCTCTAAGACGCAGAACAAGATGCAGAGTGGACTCCTTTTGAATATTGTAATCAGCC 2662 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||||| | || || |||||||||||||| ||||| || | ||| || || | ||| Sbjct 2663 AAAGTCCGCCCATCTTCAAGCTGCTTACCAGCAAATATAAGCCTCTGTTGATCAGGCGGA 2722 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||||||| ||| | |||| |||| | | | ||| || |||| || Sbjct 2723 ATACCCTCCTTGTCC-TGAATCTTTGCCTTGACATTATCAATCGTATCCGAGCTC---TC 2778 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 2779 AACCTCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 2829 >seq566467 Length=515 Score = 113 bits (124), Expect = 5e-20 Identities = 75/82 (91%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 60057 AAAAATTTTC-TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 |||||||||| ||| |||| ||||||||||||| ||||||||||||||||||||| ||| Sbjct 203 AAAAATTTTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 262 Query 60116 CTCACCACTATACTACCGAGGA 60137 || ||||||||||||||||||| Sbjct 263 CTTACCACTATACTACCGAGGA 284 >seq75854 Length=3247 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | |||||| || | ||||| ||| ||||||||||||||||||||||||| Sbjct 2113 CCACCTCTAAGACGCAAGACAAGGTGCAAAGTGGACTCCTTTTGAATATTGTAATCAGCC 2172 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||||| | | || || |||||||| ||||| ||||| || | |||||| || | || Sbjct 2173 AAAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATCAGGTGGA 2232 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||| ||| ||| | |||| || | | | | ||||| |||| || Sbjct 2233 ATACCCTCCTTATCC-TGAATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTC---TC 2288 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 2289 AACCTCTAGAGTGATCGTCTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 2339 >seq445472 Length=701 Score = 107 bits (118), Expect = 2e-18 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 60060 AATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 60119 |||| |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 438 AATTGGCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG-GATACTCA 380 Query 60120 CCACTATACTACCGAGGAT 60138 ||||||||||||||||||| Sbjct 379 CCACTATACTACCGAGGAT 361 >seq90807 Length=2923 Score = 104 bits (114), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || | |||| || |||||||| || ||||| Sbjct 1372 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTACCGTCTTCAAGCTGCTTTCCGGCGAA 1313 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||||||||| ||||| | || | || ||||||||| ||| || || | | Sbjct 1312 GATGAGTCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTCACATT 1253 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||||| ||||| || || | ||||| || || |||||||| || || || Sbjct 1252 GTCGATCGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTACCCGTTAGGGTTTTCAC 1193 Query 43172 AAAGATTTGCATTTTTACGCCGA 43194 ||||| ||||||| |||||| Sbjct 1192 GAAGATCTGCATTT---CGCCGA 1173 >seq90319 Length=2932 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| |||| |||||| |||| || || ||||| || ||||| Sbjct 1662 CTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTCGAGTTGCTTTCCGGCGAA 1721 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| |||||||| | || | | |||||||| |||||| |||| ||| Sbjct 1722 GATAAGTCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATTTTCGCCTTGA-CGT 1780 Query 43112 CGCC-ACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| ||| || || |||| |||||||| || || || || |||| Sbjct 1781 TGTCTATGGTGTCGGAGCTC---TCGACCTCGAGAGTGATGGTCTTACCAGTAAGGGTCT 1837 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 1838 TAACGAAGATTTGCAT 1853 >seq649280 Length=433 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 60 Query 60126 TACTACCGAGG 60136 |||||||| || Sbjct 61 TACTACCGCGG 71 >seq102355 Length=2708 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||| || ||||| || || || || || |||| || ||||| ||||| ||||| Sbjct 1048 CTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAA 989 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| || ||||| |||| || | | |||||||| ||| | ||||| | ||| Sbjct 988 GATGAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGTCT-TGAATCTTTGTCTTCACGT 930 Query 43112 CGCC-ACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| || | |||||| || || || || || || | Sbjct 929 TGTCGATTGTGTCCGAGCTC---TCCACCTCCAACGTGATCGTCTTTCCGGTCAGGGTTT 873 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 872 TGACGAAGATTTGCAT 857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| ||||||||||| || ||||| || |||| || ||||| ||||| ||||| Sbjct 819 TCTTTTTGGATATTGTAATCGGCGAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAG 760 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || || || || || | || | | ||||||||| || | || |||| | | | Sbjct 759 ATAAGACGTTGTTGATCCGGAGGAATTCCTTCCTTGTCC-TGTATCTTCGTTTTAACATT 701 Query 43113 G-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | ||| ||| ||| || || |||| || || || || |||||||| || || Sbjct 700 GTCGATCGTATCGGAACTC---TCGACTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTT 644 Query 43169 TACAAAGATTTGCAT 43183 ||||| || ||||| Sbjct 643 CACAAAAATCTGCAT 629 >seq50039 Length=4031 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || || || | ||||| || ||||| || || ||||| Sbjct 1024 TCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCGGCGAAG 1083 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||| | || ||||| || | || | || |||||||| |||||| ||||| | Sbjct 1084 ATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTGACATTG 1143 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| ||||| || || | ||||||||||| || ||||| || ||||| Sbjct 1144 TCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTTTTTACG 1203 Query 43173 AAGATTTGCAT 43183 || || ||||| Sbjct 1204 AAAATCTGCAT 1214 >seq40887 Length=4418 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || |||||||| |||| || || |||| ||||||||||| || ||||| Sbjct 2035 TCCTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCTAGCTGCTTTCCGGCGAAG 1976 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || | || ||||| | || | | ||||||||| ||||||| |||| ||| Sbjct 1975 ATAAGCCTTTGTTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATTTTTGCCTTGA-CGTT 1917 Query 43113 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | | || || |||| || || |||| ||||| || || || || || ||||| Sbjct 1916 GTCAATGGTATCTGAGCTC---TCGACTTCGAGAGTGATCGTCTTTCCGGTGAGAGTCTT 1860 Query 43169 TACAAAGATTTGCAT 43183 ||| ||||| ||||| Sbjct 1859 TACGAAGATCTGCAT 1845 >seq48514 Length=4088 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/146 (74%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | || | ||||| || ||||||||||| |||||||||||| Sbjct 2714 CCACCTCTAAGACGAAGGACAAGGTGCAAAGTTGATTCCTTTTGAATGTTGTAATCAGCC 2773 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| | ||| || || |||||||| ||||| ||||| || | ||| || || | ||| Sbjct 2774 AAAGTTCTCTCATCTTCAAGCTGCTTCCCAGCAAATATAAGCCTCTGTTGATCAGGCGGA 2833 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG 43102 | | |||||| ||| ||| | |||| Sbjct 2834 ATCCCCTCCTTATCC-TGAATCTTTG 2858 >seq35420 Length=4697 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || || || ||||| || || || || || |||| || |||||||| || ||||| Sbjct 1413 CTCTTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAA 1354 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | || |||||||| |||||| ||| | ||| Sbjct 1353 GATAAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTCA-CGT 1295 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || | |||||||| || || || || ||||| | Sbjct 1294 TGTCGATGGTGTCGGAGCTTTCGACCTCTAGGGTGATGGTCTTACCGGTGAGGGTCTTAA 1235 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 1234 CGAAGATTTGCAT 1222 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| ||||| | |||||||| | || ||||| ||||| ||||||||||| Sbjct 2132 CCACCTCTCAAACGAAGAACCAAATGGAGAGTTGATTCCTTCTGAATGTTGTAATCAGCA 2073 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || || ||||| || ||||| || | | ||| ||||| | || Sbjct 2072 AGAGTACGGCCGTCCTCCAGTTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCAGGTGGT 2013 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | |||||| || ||| || || | ||| | | | ||||| |||| || Sbjct 2012 ATTCCCTCCTTATCTTGGATCTTAGCCTTCA-CGTTGTCGATGGTGTCGGAGCTC---TC 1957 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || || || ||||| || ||||| ||||| Sbjct 1956 AACCTCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 1906 >seq107820 Length=2620 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/205 (69%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || | |||| || || || || || ||||| Sbjct 2059 CTCCTTCTGGATGTTGTAGTCGGCAAGGGTTCTGCCGTCCTCAAGTTGTTTCCCGGCGAA 2118 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || |||||||| ||| || || | | Sbjct 2119 AATAAGACGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTCACATT 2178 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| ||||| || || | ||| || || || || ||||| || || || Sbjct 2179 GTCGATTGTGTCGGAGGATTCAACCTCCAACGTAATCGTCTTCCCAGTTAGGGTTTTCAC 2238 Query 43172 AAAGATTTGCATTTTTACGCCGAAT 43196 ||||| ||||||||| ||||||| Sbjct 2239 GAAGATCTGCATTTTT--GCCGAAT 2261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565555411030800