Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq149253 107 3e-18 seq75854 105 1e-17 seq129439 91.5 2e-13 seq40887 86.0 9e-12 >seq149253 Length=2080 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| | ||||| || | ||| | || || ||||| || || ||||| Sbjct 839 GTTCCTCCTCTCAATCTTAGAACAAGATGAAGTGTTGACTCTTTCTGGATGTTGTAATCA 780 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||||| | ||| |||||||| |||||||||||||||||||| || ||||| ||| Sbjct 779 GCGAGTGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATCAATCTCTGTTGATCTGGA 720 Query 146168 GGAATTCCTTCTTTATC 146184 ||||| |||||||| || Sbjct 719 GGAATCCCTTCTTTGTC 703 >seq75854 Length=3247 Score = 105 bits (116), Expect = 1e-17 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146063 CTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTA 146122 || || |||| ||| ||||| ||||| || || |||||||| | | |||||| | | Sbjct 2353 CTCAAAACCAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCGGCTAAAGTTCTACCA 2412 Query 146123 TCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTA 146182 || || || || ||||||||||| |||| | || |||||||| ||||| |||||||| Sbjct 2413 TCCTCCAACTGCTTTCCAGCAAAGATCAGACGCTGTTGATCCGGTGGAATCCCTTCTTTG 2472 Query 146183 TCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATT 146242 || || ||||| |||||||| || || | ||||||| Sbjct 2473 TCCTGTATCTTAGCCTTCACATTGTCGATCGTATCAGAACTTTCAACCTCCAATGTGATT 2532 Query 146243 GTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || ||||| || |||| ||| || |||||| Sbjct 2533 GTTTTTCCAGTTAACGTCTTAACGAAGATCTGCATT 2568 >seq129439 Length=2310 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || ||||| | |||||||| | || ||||| || || || ||||| Sbjct 2200 GTTCCTCCCCTGAGTCTAAGAACCAAATGAAGCGTGGATTCCTTCTGGATGTTGTAATCA 2259 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTG 146157 | ||||||||||| ||| |||||||| |||||||||||||| ||||| || Sbjct 2260 GCAAGAGTTCTGCCATCTTCTAATTGCTTTCCAGCAAAAATTAATCTCTG 2309 >seq40887 Length=4418 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | |||||||| ||||| || || || ||||||||||| | | Sbjct 3211 CCACCACGAAGCCGGAGAACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCAGCA 3152 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || || || || || ||||| ||||| | ||||||||||| || Sbjct 3151 AGCGTACGACCATCCTCCAACTGCTTCCCTGCAAAGATCAACCGCTGCTGATCCGGTGGG 3092 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 3091 ATTCCTTCCTTATCCTG 3075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 735383763571200