Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq107321 86.0 6e-12 >seq107321 Length=2628 Score = 86.0 bits (94), Expect = 6e-12 Identities = 354/556 (64%), Gaps = 7/556 (1%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 || || || ||||| ||||| || ||||| | || || ||||| || ||||| || Sbjct 1294 CACGCGAAGTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGC 1235 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCG--GCAAATGAACCAGAAAAGA 16352 |||||||| || ||||||||||| | ||| ||||| ||| | || || || || |||| Sbjct 1234 CCTGGCATAAGCCCTCGTTTTTTGAGCCAGAATATGGCGCAGAAACTG--CCGGAGAAGA 1177 Query 16353 ATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttacttt 16412 | |||||||| || || || || | | || || || | ||| | | | | Sbjct 1176 AGATACCTTCGACGCAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGAT---CCAT 1120 Query 16413 ctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472 | |||||| | ||||| || ||||| | | | || ||| | || ||||| Sbjct 1119 CGATCCATCTGAGGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGC 1060 Query 16473 TAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 ||| | | | || || ||| ||| || || | || | || | ||| |||| Sbjct 1059 GAAACAGCCTACTCTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACTGTACA 1000 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 | || || || || ||||| ||||| ||||| || || || ||| | || || | | Sbjct 999 TCTCGGAGTGGATGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAA 940 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 ||| || || |||| | | || | |||||| || ||||||||| || | Sbjct 939 CTTGGACCTCTTTCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAGGCGG 880 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGT 16712 | || || || || | ||| | || || | | ||| ||| || || ||| | Sbjct 879 CGAAGAATGCGAGGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTCCCACT 820 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 | || | ||| ||||| ||||| || | |||||||| ||||| | || |||| Sbjct 819 GACGCTGGTCCTGTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCTTTTT 760 Query 16773 TATACATTTTCCATAT 16788 | ||||||| ||| || Sbjct 759 TGTACATTTCCCAGAT 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457446857646000