Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq90319 122 7e-23 seq35420 114 1e-20 seq86036 111 1e-19 seq102355 107 1e-18 seq90807 104 2e-17 seq40887 95.1 9e-15 >seq90319 Length=2932 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||| || || || | ||| ||||| ||||||||| |||||||| || | Sbjct 943 CCTCCCCTCAGCCTCAACACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCC 1002 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || |||| || ||||||||||||||||| ||||||| ||| ||||| || || Sbjct 1003 AAAGTCCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGTGGG 1062 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | | |||| | ||||||| Sbjct 1063 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATGGTGTCGGAGCTCTCCACC 1122 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||||||||| || |||| |||||||| || || ||||| Sbjct 1123 TCCAAAGTAATCGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 1169 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || ||||||||||| ||||||||||||||||| || || | ||||||||| Sbjct 787 TCCTCCAGCTGCTTTCCGGCGAAGATCAACCGCTGTTGGTCCGGTGGGATCCCCTCCTTG 846 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| || ||| || | | |||| || ||||||||||| |||||| Sbjct 847 TCCTGAATCTTCGCCTTCACATTATCAATCGTGTCAGAACTCTCCACCTCCAAAGTAATC 906 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||| |||||||| || || ||||| Sbjct 907 GTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 941 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||||| |||||||||||| || | |||| || Sbjct 1189 ACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCT 1248 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||||||||| ||||| | ||||||||| || || | || ||||||||| Sbjct 1249 AGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 1308 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||||| ||| || || || Sbjct 1309 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTTTTT 1368 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || |||| || ||||||||||| |||||| Sbjct 1369 CCGGTCAAGGTTTTCACAAAGATCTGCATG 1398 >seq35420 Length=4697 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | ||||| || || || ||||||||||||||||| || Sbjct 2132 CCACCTCTCAAACGAAGAACCAAATGGAGAGTTGATTCCTTCTGAATGTTGTAATCAGCA 2073 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| |||||||| ||||||||||| ||||||| ||||||||| || || Sbjct 2072 AGAGTACGGCCGTCCTCCAGTTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCAGGTGGT 2013 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| || || || ||| || | | | |||| | ||| ||| Sbjct 2012 ATTCCCTCCTTATCTTGGATCTTAGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCAACC 1953 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||| || || ||||| || || || |||||||| ||||| |||||| Sbjct 1952 TCCAGAGTGATTGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATG 1905 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||| ||||| || || | || || || || ||||||||||| Sbjct 2325 CTCCTTCTGAATGTTATAGTCAGCAAGGGTCCGGCCATCCTCAAGCTGCTTTCCGGCGAA 2266 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| || || || || | ||| ||||| ||| |||||| ||| || Sbjct 2265 GATCAGCCTCTGCTGATCCGGTGGGATACCTTCCTTATCCTGAATTTTCGCCTTCACATT 2206 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | |||||||||| || |||||||| || |||| |||||| || Sbjct 2205 GTCAATGGTGTCAGAGCTTTCCACCTCCAATGTTATCGTCTTCCCAGTCAAAGTCTTGAC 2146 Query 45325 AAAGATTTGCAT 45336 ||| || ||||| Sbjct 2145 AAAAATCTGCAT 2134 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || || |||| || || || ||||||||||| Sbjct 1640 TCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 1581 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| | ||| ||||| || || | ||| ||||||||| | ||||||||| || Sbjct 1580 ATCAATCTCTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGA-TTTTTGCTTTCACGTT 1522 Query 45266 G-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | ||| ||||| | ||| || ||||| || || || ||||| || Sbjct 1521 GTCGATTGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 1462 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 1461 GAAGATCTGCAT 1450 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| || || |||| || || || ||||||||||| Sbjct 1868 TCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCTTCAAGCTGCTTTCCGGCGAAG 1809 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| ||| ||||| ||||| | || ||||| || | |||| |||| || Sbjct 1808 ATCAACCTCTGCTGGTCTGGAGGGATGCCTTCCTTATCTTGGA-TTTTGGCTTTCACGTT 1750 Query 45266 G-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | |||| | || || || | ||| || ||||| || || || |||||||| Sbjct 1749 GTCGATGGTGTCGGAGCTTTCAACTTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTCAC 1690 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 1689 GAAGATCTGCAT 1678 >seq86036 Length=3019 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| ||||| ||||| ||| || | || ||| Sbjct 457 ACCAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCTGCAAGTGTTCGCCCATCCTCC 516 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||||||||| ||||| |||||||| || || || | |||||||| || | Sbjct 517 AGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGAATCCCCTCCTTATCTTGA 576 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | |||| | ||| ||||||| ||| |||||||| Sbjct 577 ATTTTGGTTTTAACGTTATCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATCGTCTTC 636 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || ||||| ||||| Sbjct 637 CCGGTGAGGGTTTTAACGAAGATCTGCAT 665 >seq102355 Length=2708 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| ||||| ||||| ||| || | || ||| Sbjct 1293 ACCAGGTGGAGAGTCGACTCCTTCTGGATGTTATAGTCTGCAAGTGTTCGCCCATCCTCC 1234 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||||||||| ||||| |||||||| || || || | |||||||| || | Sbjct 1233 AGTTGTTTTCCGGCGAAGATCAATCGCTGTTGATCCGGTGGAATCCCCTCCTTATCTTGA 1174 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | |||| | ||| ||||||| ||| || ||||| Sbjct 1173 ATTTTGGTTTTAACGTTATCGATGGTGTCGGAGCTCTCAACCTCCAAGGTGATTGTCTTT 1114 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || ||||| ||||| Sbjct 1113 CCGGTGAGGGTTTTAACGAAGATCTGCAT 1085 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || ||||| |||||| || |||||||||||| || || |||| || || ||| Sbjct 1059 TGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGT 1000 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| || | || || || |||||||| | || |||||||| ||| ||| Sbjct 999 TTACCGGCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGTCTTGAATCTTT 940 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | ||||| | ||||||||||| || |||||||| || ||| Sbjct 939 GTCTTCACGTTGTCGATTGTGTCCGAGCTCTCCACCTCCAACGTGATCGTCTTTCCGGTC 880 Query 45314 AGAGTCTTCACAAAGATTTGCATG 45337 || || || || |||||||||||| Sbjct 879 AGGGTTTTGACGAAGATTTGCATG 856 >seq90807 Length=2923 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| |||||||||||| ||| | | |||| || Sbjct 1389 ACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCTACCGTCTTCA 1330 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | ||||||||||| || || | || ||||||||| Sbjct 1329 AGCTGCTTTCCGGCGAAGATGAGTCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCCTGG 1270 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| || ||||||| ||| |||||||| Sbjct 1269 ATCTTCGCCTTCACATTGTCGATCGTGTCGGAGGATTCAACCTCCAAGGTGATCGTCTTA 1210 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 ||||| || || ||||| ||||| ||||| | ||| Sbjct 1209 CCCGTTAGGGTTTTCACGAAGATCTGCATTTCGCC 1175 >seq40887 Length=4418 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 || || ||| ||| ||||| |||||||||||| || ||| |||| || || ||| Sbjct 2275 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCTTCAAGCTGT 2216 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| ||||||| ||||||||| || || | || |||||||| | |||| Sbjct 2215 TTACCGGCGAAGATCAACCTCTGTTGGTCTGGTGGGATCCCTTCCTTGTCTTGGA-TTTT 2157 Query 45254 TGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||| || | | | | |||| | || || |||| ||| || || || || || Sbjct 2156 AGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCGACTTCCAAGGTGATAGTTTTTCCGGT 2097 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || ||||||||||| Sbjct 2096 GAGAGTTTTGACGAAGATTTGCAT 2073 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||||| | || | ||| || || ||||| || |||||||| ||| | Sbjct 2071 CCTCCTCTCAATCGAAGAACGAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCC 2012 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| |||| || || || ||||||||||| || | || |||||||| || || Sbjct 2011 AAGGTGCGGCCGTCTTCTAGCTGCTTTCCGGCGAAGATAAGCCTTTGTTGGTCTGGGGGA 1952 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| |||||| ||| || | | | | || | ||| || Sbjct 1951 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTATCTGAGCTCTCGACT 1892 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || |||||||| || || |||||||| || ||||| ||||| Sbjct 1891 TCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 1845 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||| ||||| || | || |||| || || |||||||||||||| Sbjct 2720 CTCCTTCTGGATGTTATAGTCCGCCAATGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAA 2661 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || ||||| || || | ||| |||||||| || |||| |||| || Sbjct 2660 GATGAGACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAA-TTTTAGCTTTGACGT 2602 Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | |||| | ||||| |||| ||| || || || || |||| || |||| Sbjct 2601 TGTCAATGGTGTCGGAGCTTTCCACTTCCAAGGTGATTGTTTTTCCGGTCAAGGTTTTCA 2542 Query 45324 CAAAGATTTGCAT 45336 ||||||| ||||| Sbjct 2541 CAAAGATCTGCAT 2529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390856748748310