Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq27206 82.4 6e-11 >seq27206 Length=5223 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||| || ||||| ||||| || || | ||| | | |||||||| ||| Sbjct 3083 TGAAGAGTCGATTCCTTCTGAATATTGTAATCCGCTAGGGTTCTGCCGTCTTCCAACTGT 3142 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || || ||||| ||||| ||| | ||||||||||| || | | Sbjct 3143 TTCCCGGCGAATATGAGCCTTTGCTGATCAGGGGGGATCCCTTCCTTATCCTGGATCT-T 3201 Query 18243 TGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||||| | | || | | || ||| |||| ||| | ||| ||| | |||||||| Sbjct 3202 TGCTTTAACGTTGTCGATTGTATCAGAACTCTCGACTTCCAAGGTAATGGTCTTGCCGGT 3261 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | ||||| ||||| || ||||| Sbjct 3262 GAGGGTTTTGACAAAGATCTGCAT 3285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 375293520061950