Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq107321 190 3e-43 seq48246 188 9e-43 seq6274 134 2e-26 seq23164 122 1e-22 >seq107321 Length=2628 Score = 190 bits (210), Expect = 3e-43 Identities = 588/905 (65%), Gaps = 6/905 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || |||||||| || || | || ||||| ||||| || || || | |||||| || | Sbjct 1585 TTCTGGTATTCGCCGACCCTCTTCTCGAAGAAATTGGTCTTACCCTGCAATGAAATCAGT 1526 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||| || || ||||||||| || || ||||||| || |||| Sbjct 1525 TCCATCCAATCAAATGGGTTCTGAACATTGTACATCTTCCCGTATCCCAAAGCACCAATC 1466 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 |||| |||||| || || || |||||||| |||| | || ||||| || | | Sbjct 1465 AATCGATCTGCTACAAACTCGATATATGTGCTCATAAGATCGGCGTTCATCCCCACCAAC 1406 Query 33471 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || | || ||||| | ||||| ||||| ||| |||| | | | Sbjct 1405 CCACACGGCAATGCTTCACAG--ACGAATTCCCTCTCAATCTCTACAGCATCAGCCACGA 1348 Query 33529 TAAATCTAACGGTTTCTTCACTCGG-TGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 | | || ||||||||| | | || | | | | | || | ||| || ||| Sbjct 1347 TTGCCTTCACTCGCTCTTCACTCAGCTTCATCTTCAACAGGCTGTAA-AGCAAGCACGCG 1289 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || || ||||||| ||||||||||| || |||||||| || || || || || ||| Sbjct 1288 AAGTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGC 1229 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || || || || ||||| ||||| ||||||| ||| ||||| |||||||| ||| Sbjct 1228 ATAAGCCCTCGTTTTTTGAGCCAGAATATGGCGCAGAAACTGCCGGAGAAGAAGATACCT 1169 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33767 || || ||| || || || | | ||| | | | ||| ||||| | Sbjct 1168 TCGACGCAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGATCCATCGATCCATCTG 1109 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33827 | ||||| | || ||||| | | ||||| || || || || || ||| || Sbjct 1108 AGGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAGCCTA 1049 Query 33828 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887 | || || || ||||| | || | |||| | ||||| ||||| || || || Sbjct 1048 CTCTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACTGTACATCTCGGAGTGG 989 Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 ||||| || || || ||||| ||||||||||| | ||||| | || || || ||| Sbjct 988 ATGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGGACCTCT 929 Query 33948 GTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCC 34007 | || ||| | || | ||||| || |||||||| ||| || || || || Sbjct 928 TTCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAGGCGGCGAAGAATGCG 869 Query 34008 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCT 34067 | || || | || || || | ||| | |||| || | ||| | | || Sbjct 868 AGGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTCCCACTGACGCTGGTCC 809 Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 | || | ||| || || ||| | ||||||||||| || ||||| ||||| ||||| | | Sbjct 808 TGTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCTTTTTTGTACATTTCC 749 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATA 34187 ||||| | | | |||||||||||||| ||| ||||||| ||| ||||| ||||| | | Sbjct 748 CAGATCTGAGGGTATTGGATTGGGAACATACAGAATCTATCTGGGTTTGGAGCAAGAAGA 689 Query 34188 GGTTC 34192 || || Sbjct 688 GGCTC 684 >seq48246 Length=4099 Score = 188 bits (208), Expect = 9e-43 Identities = 594/910 (65%), Gaps = 14/910 (2%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||| || || ||||| || | ||| ||||| ||||| || || || | || || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 |||||| |||||||||| || ||||||| | ||| | |||||||| || | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 || ||||| || |||||||| || ||| |||||| || | ||||| |||| || Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 33470 TTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATGGATACCGCATTTGTTATAA 33528 | || | || || | | | || ||| |||||| ||||||| | | | Sbjct 1465 AGCACAAGGTA-AGGCATCGCAGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGA 1523 Query 33529 TAAATCTAACGGTTTCTTCACTCGG--TGGATGTAATAAATGTTTAAACATCAAACATGC 33586 | | || ||| |||||| | | | | | || |||| |||||| || Sbjct 1524 TTCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAG--CAAACACGC 1581 Query 33587 GAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGG 33646 ||||| ||||| | ||||| |||| ||||||||||| || || || | ||| || Sbjct 1582 AAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAGG 1641 Query 33647 CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCC 33706 ||| | ||||| || || | |||||| || | ||| |||||||||||| || || Sbjct 1642 CATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAGAAAATCCC 1701 Query 33707 TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGCTGTCATGTATCCAC 33764 ||| || ||| || || |||| | |||| || ||| | || | ||| ||||| Sbjct 1702 TTCAACGCAAGCGAAAGCGATAATACGCTCTGCA-AACGTCTCCG-AGCCATCGATCCAT 1759 Query 33765 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 33824 || ||||||||| || ||||| | ||||| || || || || || || ||||| Sbjct 1760 TTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGAGT 1819 Query 33825 TAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAA 33884 | |||| |||||| || || | || | || | | | ||| ||||| || || Sbjct 1820 CTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTACATCTCGGAG 1879 Query 33885 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACT 33944 || || || || ||||| ||||| ||||||||||| | ||||| | || || || Sbjct 1880 TGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGAACC 1939 Query 33945 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 ||| | |||||| | |||| ||||| || || ||||| ||| || || || Sbjct 1940 TCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAGAAG 1999 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAAT--CATTGA 34062 || | || || | ||||| | | ||| | ||| | | ||| | | ||| Sbjct 2000 GCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGACGTTG- 2058 Query 34063 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122 ||||| ||| | ||| || ||||| |||||||||| || || || || || || |||| Sbjct 2059 -ATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGTACA 2117 Query 34123 TATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAA 34182 | | ||| || | | | || || |||||||| ||| || | || ||| ||||| |||| Sbjct 2118 TTTCCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATCTGGGTTTGGAGCAA 2177 Query 34183 GGATAGGTTC 34192 | | ||| || Sbjct 2178 GAAGAGGCTC 2187 >seq6274 Length=8207 Score = 134 bits (148), Expect = 2e-26 Identities = 209/297 (70%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 ||| || ||| | | ||||||| |||||| |||||||| || | || || | || Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGC---AAATGCA-- 4879 Query 63413 CCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 63467 || ||| ||| ||||| || || | |||| ||| |||| |||| | || | |||| Sbjct 4880 CCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAAC 4939 Query 63468 ATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGA 63527 |||||||||||||| || ||| | ||||| || || || || | |||| | || | Sbjct 4940 ATTGGAATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTG 4999 Query 63528 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63587 |||||| | || | ||| || |||||||| ||| ||| | || ||| |||| Sbjct 5000 ATATTATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTT 5059 Query 63588 AACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 || || |||||||||||||| ||||||||||| ||||| | || ||||||||| Sbjct 5060 AAAGTATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 >seq23164 Length=5532 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| ||||| || | ||| ||||| || || || |||||| ||| || | || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||| ||| | || || ||||| | ||||||||| || || || | ||||||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 || || |||||||||||||||| | | || ||||| | || ||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 63843 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| ||||||||||| | || |||||| || || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 63423 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63482 ||||| || || | || | || || | |||| | || | ||||||||||| |||||| Sbjct 1868 CCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACCA 1809 Query 63483 TTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGAT 63542 |||||| | ||||| || || || |||| |||| | |||||||||||| ||| || Sbjct 1808 TTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGAC 1749 Query 63543 AGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTGTCATAGAT 63601 | || ||||| |||| | | || | | |||| || ||| ||||| |||||||| || Sbjct 1748 ACTCCAATTCCTCCTG-CTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATAT 1690 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63644 |||| ||||| ||||| ||||| || | ||||||||| Sbjct 1689 AGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622920231280800