Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq408088 105 2e-18 seq110075 86.0 2e-12 >seq408088 Length=780 Score = 105 bits (116), Expect = 2e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 17158 GGCCCTTTAGCTAAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 17217 |||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 621 GGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 680 Query 17218 CCAGCAAGGGCCACCA 17233 ||||||||||||| || Sbjct 681 CCAGCAAGGGCCATCA 696 >seq110075 Length=2584 Score = 86.0 bits (94), Expect = 2e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 17333 ATGCGTTGTTAGCTCAGTCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCG 17392 ||||||| |||||||||| ||| ||||||| ||||||||||| | |||||| |||||| Sbjct 172 ATGCGTTCTTAGCTCAGTTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTCG 113 Query 17393 AATCCAGTACAACGC 17407 ||||| ||| ||||| Sbjct 112 AATCCTGTAGAACGC 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134702250539340