Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6274 129 5e-25 seq23164 95.1 1e-14 seq48246 93.3 4e-14 >seq6274 Length=8207 Score = 129 bits (142), Expect = 5e-25 Identities = 192/270 (71%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 ||||| || || |||||||| ||||||||||| | ||||| | | ||| || |||| Sbjct 4829 AGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACCCTTTCTT 4888 Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 ||| ||||||| || | || ||||| | | |||| |||| | | | ||||| || | Sbjct 4889 TTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACATTGGAATA 4948 Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTT 38286 |||||||||||| | || ||| | || ||| ||| | || | |||| |||||| Sbjct 4949 ATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTGATATTATGC 5008 Query 38287 ATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATTGTTTTAACGTATC 38345 | || | || || || ||||| || |||| | || | ||| |||| |||||| ||||| Sbjct 5009 ACAGAGACACCAATACCCCCTGC-TGATTTGCTGATAACAGCACATTCTTTTAAAGTATC 5067 Query 38346 AAATATACCTTCTATACTGTCATCCTTTAT 38375 | | || ||||| || || ||||| || || Sbjct 5068 ATAGATGCCTTCAATGCTATCATCTTTCAT 5097 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 ||||||| || ||||| || || || | || ||||| ||||| ||||||| | | Sbjct 5209 TTGAGGCCTGGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCTCTG 5268 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||||| |||||| ||| || || | ||||| || | | Sbjct 5269 TGACATTAAATGATATGTTTTGATTACAGAATCAATGTCTTCTTTATGAATCCCAACTGC 5328 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA-TTTTATTATTCTGTTTAAGTAGAT 38578 || ||||| ||||||||||| || ||||| | | ||| | | | |||||| |||| Sbjct 5329 AACTCTCATCAGCATATGTTGAGGCCTTTCCACAACATTTCCTTCTATCTTTAAG-AGAT 5387 Query 38579 ACGATTTTTCTAATGTTTTTATTCCAAAATAA 38610 | || |||| | ||||| | |||||||||| Sbjct 5388 AAGACCTTTCAAGGGTTTTGAATCCAAAATAA 5419 >seq23164 Length=5532 Score = 95.1 bits (104), Expect = 1e-14 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 |||||| ||| ||||| || || || | || |||||||||||| |||||||| ||| Sbjct 1544 TTGAGGTTTTGGTGTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTG 1485 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || |||||| ||||| || | || Sbjct 1484 TGACATTAAATGATATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGC 1425 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTA---TTTTATTATTCTGTTTAAGTAG 38576 |||||||||| ||||||||| |||||||| | | || || || || ||| || Sbjct 1424 AACCCTCATTAACATATGTTGAGGTCTTTCAACAACCCTTCCATGGATC--TTCAAG-AG 1368 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGC 38636 ||| ||| |||| | ||||| | ||||||||| ||| | | || | ||| ||| Sbjct 1367 ATAAGATCTTTCAAGAGTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATAT 1308 Query 38637 TATTACATTATC 38648 ||| || |||| Sbjct 1307 AATTTCACTATC 1296 >seq48246 Length=4099 Score = 93.3 bits (102), Expect = 4e-14 Identities = 377/584 (65%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||||||||||||||| ||||| || || |||| |||| ||| || || || ||| Sbjct 1574 AAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTT 1633 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAA 11745 ||||| |||||||| || ||||| || | |||||| || || ||| || || ||||| Sbjct 1634 AATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGC-GCAGAAGCTTCCGGAAAA 1692 Query 11746 GAATATTCCCTCCACAGCTGCAAATGC--TACTACTCTTTCTCCATATACCTTGTTGCTA 11803 ||| || || || || || || || || ||| | ||| || | || || | Sbjct 1693 GAAAATCCCTTCAACGCAAGCGAAAGCGATAATACGC--TCTGCAAACGTCTCCGAGCCA 1750 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 |||||||| ||||||| |||||||| | || || || || || || || Sbjct 1751 TCGATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCT 1810 Query 11864 TTAAATA-AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 || | ||| |||| || || || ||| || | || | | ||||| || Sbjct 1811 CGGAAGAGTCTGC-TTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTA 1869 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 ||| || || || ||||| || || || || || ||||| ||||| || ||||| | Sbjct 1870 CATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGC 1929 Query 11983 ACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAG 12041 | || || || ||| |||| | | |||| || || || || ||||| | Sbjct 1930 AACTTGAACCTCTTTCAT-GAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGG 1988 Query 12042 ATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCC 12101 || || || || || | || | ||||||| | ||| | | || || |||| Sbjct 1989 CGGCGAAGAAGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCC 2048 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | | | | ||||| || ||||| || ||||| | |||||||| || | | || Sbjct 2049 AGTGACGTTGATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTT 2108 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 || ||||||| ||| || | | | |||| ||| ||||| ||| Sbjct 2109 TCTTGTACATTTCCCAAATTTGAGGGTACTGAATTGGGAACATA 2152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463393809218400