Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq48246 165 1e-35 seq6274 143 3e-29 seq23164 122 1e-22 >seq48246 Length=4099 Score = 165 bits (182), Expect = 1e-35 Identities = 573/881 (65%), Gaps = 26/881 (3%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || ||||| || | ||| ||||| ||||| || || || | ||| || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 |||||| |||| || || || |||| || | ||| | |||||||| || | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 || ||||| || || ||||| || ||| |||||| || | ||||| |||| ||| Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 36046 TTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | || | || || | | | || ||| |||||| ||||| || | | | Sbjct 1465 AGCACAAGGTA-AGGCATCGCAGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGA 1523 Query 36105 TAGATATTACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATG 36161 | | ||| ||| |||||| | | | || ||| | || || |||| | Sbjct 1524 TTCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAGCA---AACACG 1580 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 | ||||| ||||||| ||||| |||| ||||||||||| || || || | ||| | Sbjct 1581 CAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAG 1640 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATT 36280 |||| | ||||| || || | |||||| || | |||| || ||| ||||||||||| Sbjct 1641 GCATCAACCCACGTTTCTTCAACCAAAAAATCG-CGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC--TGTCATGTATCC 36338 ||||| || || || || |||| | |||| | || || | | | ||| |||| Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGC--AAACGTCTCCGAGCCATCGATCC 1757 Query 36339 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 | || ||||||||| || ||||| | ||||| || || ||||| || || |||| Sbjct 1758 ATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGA 1817 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAAT-CAAAAG---ACTATACATT 36454 | | |||| |||||| || || |||||| | | || ||| ||| ||||| Sbjct 1818 GTCTGCTTTTCTCATTAGAGTCCTT----TATGTAGGATTCCAGAAGCAAACTGTACATC 1873 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 || || || || || || ||||| || || ||||||||||| | ||||| | || Sbjct 1874 TCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACT 1933 Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574 || || ||| | |||||| | |||| ||||| || || || || ||| || Sbjct 1934 TGAACCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCG 1993 Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAAT-- 36632 || || || | || || | ||||| | | ||| ||| | | ||| | Sbjct 1994 AAGAAGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGA 2053 Query 36633 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 36692 | ||| ||||| ||| | ||| || ||||| |||||||||| || || || || || | Sbjct 2054 CGTTG--ATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCT 2111 Query 36693 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 | ||||| | ||| || | | | || |||||||| || ||| Sbjct 2112 TGTACATTTCCCAAATTTGAGGGTACTGAATTGGGAACATA 2152 >seq6274 Length=8207 Score = 143 bits (158), Expect = 3e-29 Identities = 211/297 (71%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 66146 ATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 66205 ||| || ||| | | |||||| |||||| |||||||| || | || || | || Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGC---AAATGCA-- 4879 Query 66206 CCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAAC 66260 || ||| ||| ||||| || || | |||| ||| |||| |||| | || | |||| Sbjct 4880 CCCTTTCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAAC 4939 Query 66261 ATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGA 66320 ||||||||||||||||| ||||| ||||| || || || || |||||| |||| | Sbjct 4940 ATTGGAATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTG 4999 Query 66321 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 66380 |||||| | || | ||| || |||||||| ||| ||| | || ||| |||| Sbjct 5000 ATATTATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTT 5059 Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 || |||||||||||||| || || |||||||| ||||| | || ||||||||| Sbjct 5060 AAAGTATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 >seq23164 Length=5532 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| ||||| || | ||| ||||| || || || |||||| ||| || | || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||| ||| | || || ||||| | ||||||||| || || || | ||||||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 || || |||||||||||||| | | | | || ||||| | || ||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| ||||||||||| | || |||||| || || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| || || | || | || || | |||| | || | ||||||||||| ||||||| Sbjct 1868 CCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACCA 1809 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || || ||||||||| |||||||||||||| ||| || Sbjct 1808 TTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGAC 1749 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGAT 66394 | || ||||| |||| | | || | | |||| || ||| ||||| || ||||| || Sbjct 1748 ACTCCAATTCCTCCTG-CTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATAT 1690 Query 66395 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 | || || || ||||| ||||| || | ||||||||| Sbjct 1689 AGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 650964902852400