Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq102355 131 2e-25 seq40887 105 7e-18 seq86036 100 3e-16 seq90319 95.1 1e-14 seq50039 95.1 1e-14 >seq102355 Length=2708 Score = 131 bits (144), Expect = 2e-25 Identities = 153/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||| ||||| || ||| | || | ||| || |||||| Sbjct 1059 TGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGT 1000 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| || |||| |||||||||||||||||||| || ||||| ||||| ||| | || Sbjct 999 TTACCGGCGAAGATGAGACGTTGCTGATCGGGAGGGATTCCTTCCTTGTC-TTGAATCTT 941 Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 ||| || | | || | |||||| | | ||||||||| | || | |||||| ||||| Sbjct 940 TGTCTTCACGTTGTCGATTGTGTCCGAGCTCTCCACCTCCAACGTGATCGTCTTTCCGGT 881 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||| ||||| |||||||| Sbjct 880 CAGGGTTTTGACGAAGATTTGCAT 857 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | || | ||| || |||||||| || || |||||| Sbjct 856 GCCTCCACGAAGACGGAGAACGAGATGGAGCGTCGATTCTTTTTGGATATTGTAATCGGC 797 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||||||||||||||| || |||| |||||||| ||||| ||||| Sbjct 796 GAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCCGGAGG 737 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| || | || |||||| | | || | || |||| ||| | Sbjct 736 AATTCCTTCCTTGTC-CTGTATCTTCGTTTTAACATTGTCGATCGTATCGGAACTCTCGA 678 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | |||||| || || | ||||| || || || ||||| Sbjct 677 CTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAAATCTGCAT 629 >seq40887 Length=4418 Score = 105 bits (116), Expect = 7e-18 Identities = 146/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| || || |||||||| || || ||| | ||| ||||||||||| || Sbjct 2725 GTAGACTCCTTCTGGATGTTATAGTCCGCCAATGTCCGGCCGTCCTCGAGCTGTTTTCCG 2666 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| ||||||||||| || || || || ||||| ||||| ||| |||| | ||| Sbjct 2665 GCGAAGATGAGACGTTGCTGGTCTGGGGGAATACCTTCCTTGTC-TTGAATTTTAGCTTT 2607 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | ||||| || | ||| | || || |||||||| || Sbjct 2606 GACGTTGTCAATGGTGTCGGAGCTTTCCACTTCCAAGGTGATTGTTTTTCCGGTCAAGGT 2547 Query 139747 TTTTACGAATATTTGCATAGCT 139768 ||| || || || |||||| || Sbjct 2546 TTTCACAAAGATCTGCATACCT 2525 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| || || |||| || ||||||||||| || || || ||||||||| Sbjct 2455 TCTTCAAGCTGTTTTCCGGCGAAGATAAGTCGTTGCTGATCTGGGGGAATACCTTCTTTG 2396 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||| ||| | | || | |||||||| | ||||| || | ||| | Sbjct 2395 TCTTGTATTTTAGCTTTGACATTGTCGATTGTGTCGGAGCTTTCCACTTCCAAGGTGATT 2336 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || ||||| | || || ||||| || ||||| Sbjct 2335 GTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 2301 >seq86036 Length=3019 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| ||||| ||||| ||||| || ||| | || | ||| || |||||| Sbjct 691 TGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCAAGCTGT 750 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| || |||| ||||| || ||||||||||| || ||||| ||||| ||| | || Sbjct 751 TTACCGGCGAAGATGAGACGCTGTTGATCGGGAGGGATTCCTTCCTTGTC-TTGAATCTT 809 Query 139682 TGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || || | | || | ||| || | | ||| ||||| | || | |||||| ||||| Sbjct 810 CGTCTTCACGTTGTCGATTGTATCAGAGCTCTCGACCTCCAACGTGATCGTCTTTCCGGT 869 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 870 TAGGGTTTTGACGAAGATCTGCAT 893 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | || | ||| || || || || || || |||||| Sbjct 894 GCCTCCACGAAGACGAAGAACAAGATGGAGCGTCGATTCCTTCTGTATATTGTAATCGGC 953 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||||||||||||||| || |||| |||||||| ||||| ||||| Sbjct 954 GAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGG 1013 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| || | || ||||| | | || | || |||| ||| | Sbjct 1014 GATTCCTTCCTTGTC-CTGTATCTTCGTTTTCACATTGTCGATCGTATCGGAACTCTCGA 1072 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | |||||| ||||| | ||||| || || || ||||| Sbjct 1073 CTTCAAGAGTAATCGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1121 >seq90319 Length=2932 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || || || | || ||||| ||||| ||||| || ||| Sbjct 1398 GCCACCACGGAGACGGAGGACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGC 1457 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | |||||| |||||||| || || |||||| | ||||||||| || || Sbjct 1458 GAGGGTACGGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGG 1517 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || ||| | | || | ||||||| | || || Sbjct 1518 GATACCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTCGGAGCTTTCGAC 1577 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | || | ||||| ||||| | ||||| ||||||||||||||| || Sbjct 1578 CTCGAGAGTGATGGTCTTTCCGGTAAGAGTTTTGACGAATATTTGCATACCT 1629 >seq50039 Length=4031 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || || ||||| || ||| | || || ||| || |||||||| || Sbjct 1018 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCG 1077 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||||||||||| || || |||||||| ||||| |||||| ||| Sbjct 1078 GCGAAGATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTG 1137 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| || || ||||| | ||| | || || ||||| | ||| Sbjct 1138 ACATTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTT 1197 Query 139748 TTTACGAATATTTGCAT 139764 |||||||| || ||||| Sbjct 1198 TTTACGAAAATCTGCAT 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490631417112000