Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq48246 172 8e-38 seq107321 161 1e-34 seq6274 152 7e-32 seq23164 140 5e-28 >seq48246 Length=4099 Score = 172 bits (190), Expect = 8e-38 Identities = 584/902 (65%), Gaps = 16/902 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||| || || ||||| || | ||| ||||| ||||| || || || | || || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 |||||| |||||||||| || |||| || | ||| | |||||||| || | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 || ||||| || || ||||| || ||| |||||| || | ||||| |||| ||| Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 49848 TTTAACTGGAAGAGC--CGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 | || | || ||||| | || ||| |||||| |||||||| | | Sbjct 1465 AGCACAAGGTAAGGCATCGCAG--ACGAACTCTCTTTCAATCTCCACCGCATCGGAGACG 1522 Query 49906 ATAGATCTAACGGTTTCTTCACTCGGT---GGATGCAATAAATGTTTAAACATCAAACAT 49962 || | || ||| |||||| | | | || ||| | || || |||| Sbjct 1523 ATTCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAGCA---AACAC 1579 Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 || ||||| ||||| | ||||| |||| |||| |||||| || || || | ||| Sbjct 1580 GCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCA 1639 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCAGAAAAGAAGAT 50081 ||||| | ||||| || || | |||||| || | |||| | | || |||||||| || Sbjct 1640 GGCATCAACCCACGTTTCTTCAACCAAAAAATCG-CGCAGAAGCTTCCGGAAAAGAAAAT 1698 Query 50082 TCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCA 50141 ||||| || || || || | || | |||| || | | | | ||| ||||| Sbjct 1699 CCCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACGTCTCCGAGCCATCGATCCA 1758 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || ||||||||| || ||||| | ||||| || || || || || || ||||| Sbjct 1759 TTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGAG 1818 Query 50202 ATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGA 50261 | |||| |||||| || || | || | || | | | ||| ||||| || || Sbjct 1819 TCTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTACATCTCGGA 1878 Query 50262 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCAC 50321 || || || || ||||| ||||| ||||||||||| | ||||| | || || || Sbjct 1879 GTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGAAC 1938 Query 50322 TTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 50381 ||| | |||||| | |||| ||||| || || || || ||| || || || Sbjct 1939 CTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAGAA 1998 Query 50382 CGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT--CATTG 50439 || | || || | ||||| || | ||| | ||| | | ||| | | ||| Sbjct 1999 GGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGACGTTG 2058 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 ||||| ||| | ||| || ||||| |||||||||| || || || || || || ||| Sbjct 2059 --ATCTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGTAC 2116 Query 50500 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 50559 || | ||| || | | | || || |||||||| ||| || | || ||| ||||| ||| Sbjct 2117 ATTTCCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATCTGGGTTTGGAGCA 2176 Query 50560 AG 50561 || Sbjct 2177 AG 2178 >seq107321 Length=2628 Score = 161 bits (178), Expect = 1e-34 Identities = 576/895 (64%), Gaps = 4/895 (0%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || |||||||| || || | || ||||| ||||| || || || | |||||| || | Sbjct 1585 TTCTGGTATTCGCCGACCCTCTTCTCGAAGAAATTGGTCTTACCCTGCAATGAAATCAGT 1526 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||| || || |||||| || || || ||||||| || |||| Sbjct 1525 TCCATCCAATCAAATGGGTTCTGAACATTGTACATCTTCCCGTATCCCAAAGCACCAATC 1466 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 |||| ||| || ||||| || |||||||| |||| | || ||||| || | | Sbjct 1465 AATCGATCTGCTACAAACTCGATATATGTGCTCATAAGATCGGCGTTCATCCCCACCAAC 1406 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 | || | || || | ||||| ||||| ||| ||||| | | || Sbjct 1405 CCACACGGCAATGCTTCACAGACGAATTCCCTCTCAATCTCTACAGCATCAGCCACGATT 1346 Query 49909 GATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | | || ||||||||| | | || | | | | || | ||| || ||||| Sbjct 1345 GCCTTCACTCGCTCTTCACTCAGCTTCATCTTCAACAGGCTGTAA-AGCAAGCACGCGAA 1287 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 || ||||||| ||||||||||| || | |||||| || || || || || ||||| Sbjct 1286 GTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGCAT 1227 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTT 50086 || || || ||||| ||||| ||||||| |||| || || || |||||||| |||| Sbjct 1226 AAGCCCTCGTTTTTTGAGCCAGAATATGG-CGCAGAAACTGCCGGAGAAGAAGATACCTT 1168 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTT 50146 | || || || || | | | ||| | | | | ||| ||||| | Sbjct 1167 CGACGCAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGATCCATCGATCCATCTGA 1108 Query 50147 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 50206 | ||||| | || ||||| | | ||||| || || || || || ||| || Sbjct 1107 GGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAGCCTAC 1048 Query 50207 ttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAA 50266 | || || || ||||| | || | |||| | ||||| ||||| || || || | Sbjct 1047 TCTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACTGTACATCTCGGAGTGGA 988 Query 50267 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 50326 |||| || || || ||||| ||||||||||| | ||||| | || || || ||| Sbjct 987 TGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGGACCTCTT 928 Query 50327 TACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 50386 | || ||| | || | ||||| || ||||| || ||| || || || || | Sbjct 927 TCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAGGCGGCGAAGAATGCGA 868 Query 50387 ATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTT 50446 || || | || || | | ||| |||| || | ||| | | || | Sbjct 867 GGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTCCCACTGACGCTGGTCCT 808 Query 50447 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 50506 || | ||| || || ||| | ||||||||||| || ||||| ||||| ||||| | || Sbjct 807 GTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCTTTTTTGTACATTTCCC 748 Query 50507 AGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 50561 |||| | | | |||||||||||||| ||| ||||||| ||| ||||| ||||| Sbjct 747 AGATCTGAGGGTATTGGATTGGGAACATACAGAATCTATCTGGGTTTGGAGCAAG 693 >seq6274 Length=8207 Score = 152 bits (168), Expect = 7e-32 Identities = 209/292 (72%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 80025 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 80084 ||| || ||| | | ||||||| |||||| |||||||| || | || | | ||| Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACCCTT 4884 Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 || ||| ||||| || || | |||| ||| |||| |||| | || | ||||||||| Sbjct 4885 TCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACATTGG 4944 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 |||||||||||| ||||| ||||| || || || || |||||| | || | ||||| Sbjct 4945 AATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTGATATT 5004 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 | | || | ||| || |||||||| ||| ||| | || ||| |||||| || Sbjct 5005 ATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTTAAAGT 5064 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 |||||||||||| || ||||||||||| ||||| | || ||||||||| Sbjct 5065 ATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 >seq23164 Length=5532 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| ||||| || || || |||||| ||| |||| || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||| ||| | ||||| ||||| | ||||||||| || || || | ||||||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || || |||||||||||||| | | | || || ||||| | |||||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| ||||||||||| | || |||||| || || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||| || || | || | || || | |||| | || | ||||||||||| ||||||| Sbjct 1868 CCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACCA 1809 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || ||||| ||||| || || || ||||||||| | |||||||||||| ||| || Sbjct 1808 TTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGAC 1749 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGAT 80273 | || ||||| |||| | | || | | |||| || ||| ||||| || ||||| || Sbjct 1748 ACTCCAATTCCTCCTG-CTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATAT 1690 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 | || ||||| ||||| ||||| || | ||||||||| Sbjct 1689 AGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710402769020400