Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq48246 109 5e-19 seq119719 91.5 1e-13 >seq48246 Length=4099 Score = 109 bits (120), Expect = 5e-19 Identities = 126/167 (75%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||||||||||||||| || | |||||||||| || | |||||| || || ||| Sbjct 1574 AAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTT 1633 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAA 13987 ||||| |||||||| || ||||| || |||||||| || || ||| || |||||||| Sbjct 1634 AATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGC-GCAGAAGCTTCCGGAAAA 1692 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACG 14034 ||| || || ||||| ||| || || || | || ||| |||||| Sbjct 1693 GAAAATCCCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACG 1739 >seq119719 Length=2442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| |||||||| || ||||| |||||| ||||||| ||||| || || || Sbjct 195 ACAAGCAAAGTCACAATGTAGACCCTCGTCTCTAGATATAAGTTTATTTGAGAAAGTCAA 136 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13968 |||||||| ||||| | || |||||||||||||||| Sbjct 135 CCCTGGCATTAATCCCCTCTTCTTTAACCAAAATATTG 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474474318774000