Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq48246 118 1e-21 seq119719 91.5 1e-13 >seq48246 Length=4099 Score = 118 bits (130), Expect = 1e-21 Identities = 239/349 (68%), Gaps = 13/349 (4%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||||||||||||||| || | |||||||||| || | |||||| || || ||| Sbjct 1574 AAACACGCAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTT 1633 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 ||||| |||||||| || ||||| || |||||||| || || ||| |||||||||| Sbjct 1634 AATCCAGGCATCAACCCACGTTTCTTCAACCAAAAAATCGCGCAGAAGCTTCCGGAAAAG 1693 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || || ||||| ||| || || || | || ||| |||||| | | | Sbjct 1694 AAAATCCCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAACG-----TCTCCGAGC 1748 Query 13837 GAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 || |||||||| |||||| | | ||| || | || | | || || ||||||| Sbjct 1749 CATCGATCCATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTG 1808 Query 13895 CATTGAATA-AATGTTCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGC 13951 | ||| | || | ||||| || ||| ||| ||||| | || | ||| || | Sbjct 1809 CTCGGAAGAGTCTGCT-TTTCTCATTAGAGTCCTT--TATGTAGGATTCCAGAAGCAAAC 1865 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 | ||||| || ||||| || || || || || ||||| || || || || Sbjct 1866 TGTACATCTCGGAGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAA 1914 >seq119719 Length=2442 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||| |||||||| || ||||| |||||| ||||||| ||||| || || || Sbjct 195 ACAAGCAAAGTCACAATGTAGACCCTCGTCTCTAGATATAAGTTTATTTGAGAAAGTCAA 136 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13756 |||||||| ||||| | || |||||||||||||||| Sbjct 135 CCCTGGCATTAATCCCCTCTTCTTTAACCAAAATATTG 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473347594580400