Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq102355 91.5 1e-13 seq26754 91.5 1e-13 seq86036 86.0 5e-12 seq40887 82.4 6e-11 >seq102355 Length=2708 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | | || | ||||| || || ||||| | ||||||||||| Sbjct 856 GCCTCCACGAAGACGGAGAACGAGATGGAGCGTCGATTCTTTTTGGATATTGTAATCGGC 797 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| |||| || | ||||| ||||| || || | || |||||||| | || Sbjct 796 GAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCCGGAGG 737 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || ||| ||| | ||| || || | | || ||| | ||||| Sbjct 736 AATTCCTTCCTTGTC-CTGTATCTTCGTTTTAACATTGTCGATCGTATCGGAACTCTCGA 678 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||||| || || || ||||| |||||||||||||| ||||| Sbjct 677 CTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAAATCTGCAT 629 >seq26754 Length=5255 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | |||||| || | || || | | | || |||||||| ||||| | ||| Sbjct 424 TCCTTCTGGATATTGTAGTCCGCCAGGGTTCTTCCATCCTCCAATTGCTTGCCAGAGAAA 365 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 || | | ||| ||||| | || | ||||| |||||| |||| || | ||| || | Sbjct 364 ATGAGCCTCTGCTGATCAGGGGGAATACCTTATTTTTC-CTGAATCTTCGTTTTCACGTT 306 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| || |||||| || | ||| || || || ||||| || |||||||| Sbjct 305 GTCGATTGTGTCAGAAGTCTCGACCTCCAACGTAATGGTCTTGCCGGTGAGGGTTTTCAC 246 Query 43098 AAAAATTTGCAT 43109 ||| || ||||| Sbjct 245 AAAGATCTGCAT 234 >seq86036 Length=3019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | | || | ||||| || ||||| || | ||||||||||| Sbjct 894 GCCTCCACGAAGACGAAGAACAAGATGGAGCGTCGATTCCTTCTGTATATTGTAATCGGC 953 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | ||||| |||| || | ||||| ||||| || || | || |||||||| | || Sbjct 954 GAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCTGGAGG 1013 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | ||||| || || ||| ||| | ||| || || | | || ||| | ||||| Sbjct 1014 GATTCCTTCCTTGTC-CTGTATCTTCGTTTTCACATTGTCGATCGTATCGGAACTCTCGA 1072 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || |||||||| ||||||||||| || ||||| Sbjct 1073 CTTCAAGAGTAATCGTCTTACCGGTTAGGGTTTTCACAAAGATCTGCAT 1121 >seq40887 Length=4418 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | || | ||||| ||| ||| || || | ||||| |||| Sbjct 2300 GCCACCACGGAGGCGGAGGACGAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGC 2241 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| || | ||||| ||||| || ||||| | |||||| || | || Sbjct 2240 GAGGGTGCGGCCGTCTTCAAGCTGTTTACCGGCGAAGATCAACCTCTGTTGGTCTGGTGG 2181 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGA 43060 | ||||| || || ||| ||||||| || | | ||||| ||| | ||| Sbjct 2180 GATCCCTTCCTTGTCTTGGATTTTAGCTTTGACGTTGTCGATGGTGTCAG-AGCTTTCGA 2122 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || |||||||||||||| |||||||| || || |||||||| Sbjct 2121 CTTCCAAGGTGATAGTTTTTCCGGTGAGAGTTTTGACGAAGATTTGCAT 2073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377297491534380