Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq48246 197 2e-45 seq107321 174 2e-38 seq23164 134 2e-26 seq6274 134 2e-26 >seq48246 Length=4099 Score = 197 bits (218), Expect = 2e-45 Identities = 592/903 (66%), Gaps = 18/903 (2%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || || ||||| || | ||| ||||| ||||| ||||| || | || || || Sbjct 1285 TTTCTGATACTCACCAACCCTTTTCTCGAAGAAATTGGTCTTCCCCTGTAACGAAATCAG 1344 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 |||||| |||||||||| || |||| || | ||| | |||||||| || | Sbjct 1345 TTCCATCCAATCAAACGGGTTCTGGGCATTGTACAATTTCCCATATCCCAATGCACCCAA 1404 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 || ||||| || | |||||| || ||| |||||| || | ||||| |||| ||| Sbjct 1405 TAACCTATCAGCAACGAATTCGATGTATTCACTCATCAGATCCCCGTTCATCCCTACAAG 1464 Query 41953 TTTAACTGGAAGAGCCACAGTA-AGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || | || || | | | || ||| |||||| ||||| || | | | Sbjct 1465 AGCACAAGGTA-AGGCATCGCAGACGAACTCTCTTTCAATCTCCACCGCATCGGAGACGA 1523 Query 42012 TAGATCTTACTGTTTCTTCACTCGGT---GGATACAATAAATGTTTAAACATCAAACATG 42068 | | ||| ||| |||||| | | | || ||| | || || |||| | Sbjct 1524 TTCCCTTGACTCGTTCCTCACTCAGCTTCGTCTTCAGTAACCCATAAAGCA---AACACG 1580 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 | ||||| ||||| | |||||||||| ||||||||||| || || || | ||| | Sbjct 1581 CAAAATCACAGTGTAATCCCTCATCTCGCGAGATTAATTCGTTCGAGAAGGTTAATCCAG 1640 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATT 42187 |||| | ||||| || || | |||||| || | |||| | | | || |||||||| || Sbjct 1641 GCATCAACCCACGTTTCTTCAACCAAAAAATCG-CGCAGAAGCTTCCGGAAAAGAAAATC 1699 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGT--CATGTATCC 42245 ||||| || || || || |||| | |||| || | || | | | ||| |||| Sbjct 1700 CCTTCAACGCAAGCGAAAGCGATAATACGCTCTGCAAA--CGTCTCCGAGCCATCGATCC 1757 Query 42246 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | || ||||||||| || ||||| | ||||| || || || || || || |||| Sbjct 1758 ATTTGAGAGCCCAATTCGCTTTCTTCTCAACACACGGAATAGTCTCGATTGCTCGGAAGA 1817 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 | | |||| |||||| || || | || | || | | | ||| ||||| || | Sbjct 1818 GTCTGCTTTTCTCATTAGAGTCCTTTATGTAGGATTCCAGAAGCAAACTGTACATCTCGG 1877 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 | || || || || ||||| ||||| ||||||||||| | ||||| | ||| || | Sbjct 1878 AGTGGATATTCTCGATGGCAATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGAA 1937 Query 42426 CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 | ||| | |||||| | |||| ||||| || || || || ||| || || | Sbjct 1938 CCTCTTTCATGAATCGTCCGGCTAGGTTTTCCAAAACGATGCCATCGGAGGCGGCGAAGA 1997 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCA--TT 42543 | || | || || | ||||| | | ||| | ||| || | ||| | | || Sbjct 1998 AGGCAAGGACGTGAGTGATAAAGTGCCTCTCGCCGTCTGTCAACGAGTCCCAGTGACGTT 2057 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 ||| ||| ||| | ||| || ||||| | |||||||| || ||||| || || || || Sbjct 2058 GAT--CTTCAGACAAATCGACCTCTTCGGCTGTCCAAAACGAAGCTTCGGCTTTCTTGTA 2115 Query 42604 CATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGC 42663 ||| | ||| || | | | || ||||||||||| ||| || | || ||| ||||| || Sbjct 2116 CATTTCCCAAATTTGAGGGTACTGAATTGGGAACATACAGAAGCGATCTGGGTTTGGAGC 2175 Query 42664 AAG 42666 ||| Sbjct 2176 AAG 2178 >seq107321 Length=2628 Score = 174 bits (192), Expect = 2e-38 Identities = 581/897 (65%), Gaps = 8/897 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || |||||||| || || | || ||||| ||||| ||||| || | |||||| || | Sbjct 1585 TTCTGGTATTCGCCGACCCTCTTCTCGAAGAAATTGGTCTTACCCTGCAATGAAATCAGT 1526 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| || || |||||| || || || ||||||| || |||| Sbjct 1525 TCCATCCAATCAAATGGGTTCTGAACATTGTACATCTTCCCGTATCCCAAAGCACCAATC 1466 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 |||| |||||| | || || |||||||| |||| | || ||||| || | | Sbjct 1465 AATCGATCTGCTACAAACTCGATATATGTGCTCATAAGATCGGCGTTCATCCCCACCAAC 1406 Query 41954 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || | || ||||| | ||||| ||||| || || || | | | Sbjct 1405 CCACACGGCAATGCTTCACAG--ACGAATTCCCTCTCAATCTCTACAGCATCAGCCACGA 1348 Query 42012 TAGATCTTACTGTTTCTTCACTCGG-TGGATACAATAAATGTTTAAACATCAAACATGCG 42070 | | | ||| ||||||||| | | || | | | | || | ||| || ||| Sbjct 1347 TTGCCTTCACTCGCTCTTCACTCAGCTTCATCTTCAACAGGCTGTAA-AGCAAGCACGCG 1289 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || || ||||||| |||||| |||| || |||||||| || || || || || ||| Sbjct 1288 AAGTCACAGTGCAAACCCTCGTCTCGCGAGATCAATTCGTTCGAGAATGTTAGCCCTGGC 1229 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAAGATTCC 42189 || || || || ||||| ||||| ||||| | |||| | | || || |||||||| || Sbjct 1228 ATAAGCCCTCGTTTTTTGAGCCAGAATATGG-CGCAGAAACTGCCGGAGAAGAAGATACC 1170 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTT 42249 ||| || || || || || | | ||| | | || ||| ||||| | Sbjct 1169 TTCGACGCAAGCGAAAGCGATGATCCGTTCTGCGAAGGTTTCAGATCCATCGATCCATCT 1110 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 | ||||| | || ||||| | | ||||| || || || || || ||| || Sbjct 1109 GAGGGCCCATTTAGCTTTCTTCTGGATGCAAGGGATGGTATCGATTGCGCGAAACAGCCT 1050 Query 42310 GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG 42369 | || || || ||||| | |||| |||| | ||||| ||||| || || || Sbjct 1049 ACTCTTCTCGTTGGAGTCTTTGATGTATGATTCGAGAAGCAGACTGTACATCTCGGAGTG 990 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||| || || || ||||| ||||||||||| | ||||| | ||| || || || Sbjct 989 GATGTTCTCGATTGCGATCTGGAATCCGTAGAAGGCACGCGCCTCCGCAACTTGGACCTC 930 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | || ||| | || | ||||| || ||||| || ||| || || || || Sbjct 929 TTTCATGAACCGTCCGGCGAGGTTTTCCAATACGATTCCATCGGAGGCGGCGAAGAATGC 870 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATC 42549 | || || | || || || | ||| | ||| || | ||| | | || Sbjct 869 GAGGACGTGAGTGATGAAGTACCTCTCGCCATCGCTTAGGTTGTCCCACTGACGCTGGTC 810 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609 | || | ||| || || || ||||||||||||| |||||||| ||||| ||||| | Sbjct 809 CTGTGACAAATCAACCTCCTCCGCCGTCCAAAATGAAGCTTCTGCTTTTTTGTACATTTC 750 Query 42610 CCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 42666 |||||| | | | ||||| |||||||| ||| ||||||| ||| ||||| ||||| Sbjct 749 CCAGATCTGAGGGTATTGGATTGGGAACATACAGAATCTATCTGGGTTTGGAGCAAG 693 >seq23164 Length=5532 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | ||| ||||| || || || |||||| ||| |||| || || Sbjct 1531 GTTCCTGCATTGAAAAGGGTGGGAGATGCATGTGTGAACCATCTTTGTGACATTAAATGA 1472 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || |||| ||| | ||||| ||||| | ||| ||||| || || || | ||||||| Sbjct 1471 TATGTCTTGATAACAGATTCAATATCATTCTTATGAATTCCAACAGCAACCCTCATTAAC 1412 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 ||||| |||||||||||||| | | | || || ||||| | || ||| |||| | | Sbjct 1411 ATATGTTGAGGTCTTTCAACAACCCTTCCATGGATCTTCAAGAGATAAGATCTTTCAAGA 1352 Query 72598 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| ||||||||||| | || |||||| || || || ||||| Sbjct 1351 GTTTTGAAACCAAAATAATCATAGTCAAAGTCACGATCATATATAAT 1305 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||| || || | || | || || | |||| | || | ||||||||||| ||||||| Sbjct 1868 CCTCCTTGGTCAACATAACGGGCAGTATCATTAAACACACGCAACATTGGAACAATACCA 1809 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| ||||| || || || ||||||||| | ||||||||||| ||| || Sbjct 1808 TTTGATGTTCCATTTGTTCCACGTATGTAGCTTCCAGTTGCACGAATATTATGAATAGAC 1749 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAAT-GCGCATCGTTTTAACGTATCATAGAT 72356 | || ||||| |||| | | || | | |||| || ||| ||||| || ||||| || Sbjct 1748 ACTCCAATTCCTCCTG-CTTGTTTGCTAATAATAGCACATTCCTTTAATGTGTCATATAT 1690 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 | || || || ||||| ||||| || | ||||||||| Sbjct 1689 AGCTTCAATGCTGTCATCTTTCATGCAAATCAAGAAACAGCTA 1647 >seq6274 Length=8207 Score = 134 bits (148), Expect = 2e-26 Identities = 205/292 (70%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 72108 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 ||| || ||| | | ||||||| |||||| |||||||| || | || | | ||| Sbjct 4825 ATCAAGAAACTCAAAGATATCAGCATGCCATGGTTCCAAATAAACAGCAAATGCACCCTT 4884 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 | ||| ||||| || || | |||| ||| |||| |||| | || | ||||||||| Sbjct 4885 TCTTTTACCACCTCCTTGGTCAACATATCGAGCAGTGTCATTAAACACACGCAACATTGG 4944 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 72287 |||||||||||| |||| ||||| || || || || |||||| | || | ||||| Sbjct 4945 AATAATACCATTAGATGTTCCATTTGTGCCACGTATGTAACTTCCAGTTGCTCTGATATT 5004 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 | || | ||| || |||||||| ||| ||| | || ||| |||||| || Sbjct 5005 ATGCACAGAGACACCAATACCCCCTGCTGATTTGCTGATAACAGCACATTCTTTTAAAGT 5064 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 |||||||||||| || || |||||||| ||||| | || ||||||||| Sbjct 5065 ATCATAGATGCCTTCAATGCTATCATCTTTCATGCATATCAGGAAACAGCTA 5116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663789302943600