Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq102355 113 5e-20 seq40887 93.3 4e-14 seq90319 89.7 5e-13 seq50039 89.7 5e-13 >seq102355 Length=2708 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||||| || || || ||||| |||||||| ||| Sbjct 1083 CCTCCACGAAGACGAAGGACGAGATGAAGCGTTGACTCCTTTTGGATGTTGTAGTCGGCG 1024 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||| || || |||||||| || |||| |||||||||||||||||||| Sbjct 1023 AGGGTACGGCCGTCCTCAAGCTGTTTACCGGCGAAGATGAGACGTTGCTGATCGGGAGGG 964 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| ||| || | | || | ||||||| | || || Sbjct 963 ATTCCTTCCTTGTCTTGAATCTTTGTCTTCACGTTGTCGATTGTGTCCGAGCTCTCCACC 904 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| ||||||| ||||| ||||| |||||||| Sbjct 903 TCCAACGTGATCGTCTTTCCGGTCAGGGTTTTGACGAAGATTTGCAT 857 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | ||| | ||| | || ||||||||||| || ||||||||| Sbjct 856 GCCTCCACGAAGACGGAGAACGAGATGGAGCGTCGATTCTTTTTGGATATTGTAATCGGC 797 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||||||||| |||||||| || |||| |||||||| ||||| ||||| Sbjct 796 GAGAGTACGGCCGTCTTCGAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCCGGAGG 737 Query 143077 TATGCCTTCTTTGT-CGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCT 143134 || ||||| |||| | ||| | || |||||| | | || | ||| || | || Sbjct 736 AATTCCTTCCTTGTCCTGTA--TCTTCGTTTTAACATTGTCGATCGTATCGGAACTCTCG 679 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | ||| | |||||| || || | ||||| || || || ||||| Sbjct 678 ACTTCGAGAGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAAATCTGCAT 629 >seq40887 Length=4418 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||| | ||||| || || || ||||| || || | Sbjct 2755 CCTCCACGGAGACGGAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTATAGTCCGCC 2696 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||| ||||| ||||| || || |||| ||||||||||| || || || Sbjct 2695 AATGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGA 2636 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| ||| | | || | ||||| | | ||| ||| Sbjct 2635 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACGTTGTCAATGGTGTCGGAGCTTTCCACT 2576 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | || | || || |||||||| ||||| || || || |||||| || Sbjct 2575 TCCAAGGTGATTGTTTTTCCGGTCAAGGTTTTCACAAAGATCTGCATACCT 2525 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || || | ||| | |||| || ||||| ||||| |||||||||||| | Sbjct 2071 CCTCCTCTCAATCGAAGAACGAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCC 2012 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| || || || || || |||| || | ||| || || || || Sbjct 2011 AAGGTGCGGCCGTCTTCTAGCTGCTTTCCGGCGAAGATAAGCCTTTGTTGGTCTGGGGGA 1952 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| |||||| || | | || | || || | | || ||| Sbjct 1951 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTATCTGAGCTCTCGACT 1892 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| ||||| | || |||||||| || ||||| Sbjct 1891 TCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCAT 1845 >seq90319 Length=2932 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | || ||||| | || || || ||||| |||||||| ||| Sbjct 1398 GCCACCACGGAGACGGAGGACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGC 1457 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||| || ||||| || || |||||| | ||||||||| || || Sbjct 1458 GAGGGTACGGCCGTCTTCTAGCTGTTTTCCGGCGAAGATCAATCTTTGCTGATCTGGGGG 1517 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || ||| | | || | ||||| | | ||| || Sbjct 1518 GATACCTTCCTTGTCTTGGATCTTGGCTTTCACGTTATCGATGGTGTCGGAGCTTTCGAC 1577 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | ||||| ||||| | ||||| ||||||||||||||| || Sbjct 1578 CTCGAGAGTGATGGTCTTTCCGGTAAGAGTTTTGACGAATATTTGCATACCT 1629 >seq50039 Length=4031 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||| | || || ||| || || ||||| || Sbjct 1018 GTGGATTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCTGTCGTCCTCCAGCTGTTTTCCG 1077 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||||||||||| || || |||||||| ||||| ||||| ||| Sbjct 1078 GCGAAGATGTGACGTTGCTGATCCGGTGGGATGCCTTCCTTGTCTTGGATTTTCGCTTTG 1137 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || |||||| || | || | || || ||||| | ||| Sbjct 1138 ACATTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTGATGGTTTTCCCGGTTAGGGTT 1197 Query 143168 TTTACGAATATTTGCAT 143184 |||||||| || ||||| Sbjct 1198 TTTACGAAAATCTGCAT 1214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501461895175200