Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq107321 136 6e-27 seq48246 111 2e-19 >seq107321 Length=2628 Score = 136 bits (150), Expect = 6e-27 Identities = 392/587 (67%), Gaps = 26/587 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || ||| || | | | || ||||||||||||||||| || | || || |||| Sbjct 721 TGTTCCCAATCCAATACCCTCAGATCTGGGAAATGTACAAAAAAGCAGAAGCTTCATTTT 780 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| || ||||| ||| |||| |||||| | | ||||| | | | | | Sbjct 781 GGACGGCGGAGGAGGTTGATTTGTCACAGGACCAGCGTCAGTGGGACAACC---TAAGCG 837 Query 125116 AAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 | || ||||||| || || | ||| | | || ||||| |||| |||||||||| Sbjct 838 A---TG-GCGAGAGGTACTTCATCACTCACGTCCTCGCATTCTTCGCCGCCTCCGATGGA 893 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGT 125229 ||||| || || || ||| ||| ||||| | ||| || | |||| | Sbjct 894 ATCGTATTGGAAAACCTCGCCGGACGGTTCATGAAAGAGGT--CCAAGTTGCGGAGGCG- 950 Query 125230 CGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACA 125288 ||||| || ||||||||||| ||| || |||||| | ||||| || |||||| | Sbjct 951 CGTGCCTTCTACGGATTCCAGATCGCAATCGAGAACATCCACTCCGAGATGTACAGTCTG 1010 Query 125289 CTGATTGACATGTACATTCGCGATCCGCAACGTAAACAC-ATGCTCTTTAACGCAATCGA 125347 || | || ||||| || | ||||| || | | ||| ||| ||||||||| Sbjct 1011 CTTCTCGAATCATACATCAAAGACTC-CAACGAGAAGAGTAGGCTGTTTCGCGCAATCGA 1069 Query 125348 CACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATG-ACGACA 125406 || | || | || | || || ||| |||||| | | |||||||||| | | Sbjct 1070 TACCATCCCTTGCATCCAGAAGAAAGCTAAATGGGCCCTCAGATGGATCGATGGATCTGA 1129 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 | ||||| | || || | | || ||||| ||| || || |||||||| || | Sbjct 1130 AACCTTCGCAGAACG---GA-TCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCG 1185 Query 125467 GTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | ||||| |||| |||| || |||||||| || || || || ||||| || || || | Sbjct 1186 GCAGTTTCTGCG-CCATATTCTGGCTCAAAAAACGAGGGCTTATGCCAGGGCTAACATTC 1244 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| || || || ||||||||||| | ||||||||||| || Sbjct 1245 TCGAACGAATTGATCTCGCGAGACGAGGGTTTGCACTGTGACTTCGC 1291 >seq48246 Length=4099 Score = 111 bits (122), Expect = 2e-19 Identities = 380/580 (66%), Gaps = 17/580 (3%) Strand=Plus/Minus Query 124999 TTCCCA--TCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTG 125056 |||||| |||| || | | | ||||||||||||||||| || || | || || ||||| Sbjct 2148 TTCCCAATTCAG-TACCCTCAAATTTGGGAAATGTACAAGAAAGCCGAAGCTTCGTTTTG 2090 Query 125057 GACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG--ATTGGGAGACTCGTTTGACT 125114 ||| | ||||||||||||| |||| | || | ||| | ||| |||||| ||||| Sbjct 2089 GACAGCCGAAGAGGTCGATTTGTCTGAAGA--TCAACGTCACTGG--GACTCG-TTGACA 2035 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||| | | ||||| | ||| | | |||||||| |||| ||||||||| ||| Sbjct 2034 GACGGCGAGAGGCACTTTATCACTCACGTCCTTGCCTTCTTCGCCGCCTCCGATGGCATC 1975 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG- 125233 || || || || ||||||| ||||| | || | |||| | |||| Sbjct 1974 GTTTTGGAAAACCTAGCCGGACGATTCATGAAAGAGGTTCAAGTTGCGGAGGCG-CGTGC 1916 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||||||||| || || ||||| | ||||| || |||||| | || | Sbjct 1915 CTTCTACGGATTCCAGATTGCCATCGAGAATATCCACTCCGAGATGTACAGTTTGCTTCT 1856 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 || ||||| || | | ||| || ||||| |||||||| || | Sbjct 1855 GGAATCCTACATAAAGGACTCTAATGAGAAAAGCAGACTCTTCCGAGCAATCGAGACTAT 1796 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 |||| | | || || || | |||| | |||||||||| | || | Sbjct 1795 TCCGTGTGTTGAGAAGAAAGCGAATTGGGCTCTCAAATGGATCGATGGCTCGGAG---AC 1739 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-TT 125472 || || || | | | || ||||| ||| || || || |||||||| || || || Sbjct 1738 GTTTGCAGAGCGTATTATCGCTTTCGCTTGCGTTGAAGGGATTTTCTTTTCCGGAAGCTT 1679 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 ||| || || |||||| | ||||| || || | ||||| ||| | || | |||| Sbjct 1678 CTGC-GCGATTTTTTGGTTGAAGAAACGTGGGTTGATGCCTGGATTAACCTTCTCGAACG 1620 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | || || || ||||| ||||| |||||||||| ||||| Sbjct 1619 AATTAATCTCGCGAGATGAGGGATTACACTGTGATTTTGC 1580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 732943582803600