Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq90319 116 3e-21 seq27206 107 1e-18 seq102355 100 2e-16 seq149253 98.7 7e-16 seq78250 98.7 7e-16 seq75854 98.7 7e-16 seq40887 91.5 1e-13 seq48514 86.0 4e-12 >seq90319 Length=2932 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || || || |||||||| ||| || |||| |||||||| Sbjct 1189 ACCAAATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCT 1248 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| || ||| | ||||| | |||||||| ||||||||||| ||||| Sbjct 1249 AGCTGTTTTCCGGCGAAGATCAATCTCTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGG 1308 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || ||||| ||| | || || || ||||| |||||||| Sbjct 1309 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTTTTT 1368 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||| ||||| || ||||| Sbjct 1369 CCGGTCAAGGTTTTCACAAAGATCTGCAT 1397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || || || |||||||||||| | | | | |||| || | ||| Sbjct 1650 ATGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAAAGTCCGGCCGTCCTCGAGTTG 1709 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || || ||| | || | | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 1710 CTTTCCGGCGAAGATAAGTCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCTTGGATTTT 1769 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | |||||||| ||| | || || || | || ||||| ||||| || Sbjct 1770 CGCCTTGACGTTGTCTATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTACCAGT 1829 Query 15340 CAGAGTTTTTACAAAAATTTGCATATTTGAAAATAA 15375 || || || || || |||||||| | | |||| || Sbjct 1830 AAGGGTCTTAACGAAGATTTGCATCTGTTAAAAAAA 1865 >seq27206 Length=5223 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| || || |||||| ||| |||| |||| || | || Sbjct 3311 TGAAGGGTGGACTCCTTTTGGATATTATAATCGGCTAGGGTTCTGCCGTCCTCGAGCTGC 3370 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | || | |||||||| || ||||||||||| ||||| || ||| Sbjct 3371 TTGCCGGCGAAGATGAGCCGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTG 3430 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||||||| | | || || || | ||||| || || || || Sbjct 3431 GCTTTGACATTATCAATGGTATCGGAACTCTCCACCTCGAGAGTAATCGTCTTCCCCGTT 3490 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| || || || ||||||||| Sbjct 3491 AGGGTTTTCACGAAGATCTGCATATTT 3517 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || |||||||| | ||| | ||| | || || || ||||| ||||| ||||| | Sbjct 2831 CCTCCCCTCAATCTCAGAACAAGATGCAAAGTCGATTCCTTTTGAATGTTATAATCAGCT 2890 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| || || || || || | |||| ||| ||||| || |||| Sbjct 2891 AAAGTTCTACCATCTTCCAACTGCTTCCCGGCAAAGATCAGACGCTGTTGATCCGGTGGA 2950 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||| || ||| ||| | || || ||||| | |||| || Sbjct 2951 ATCCCTTCTTTGTCTTGAATCTTAGCCTTGACATTGTCGATCGTATCAGAACTTTCAACC 3010 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || || ||||| || || | || || || || || ||||| Sbjct 3011 TCTAGAGTGATTGTTTTCCCGGTTAACGTCTTGACGAAGATCTGCAT 3057 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| || || || || || || |||||||| ||| |||| ||||||| || || Sbjct 3082 ATGAAGAGTCGATTCCTTCTGAATATTGTAATCCGCTAGGGTTCTGCCGTCTTCCAACTG 3141 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| || ||| |||| | | ||| || || || || ||||| || || || || Sbjct 3142 TTTCCCGGCGAATATGAGCCTTTGCTGATCAGGGGGGATCCCTTCCTTATCCTGGATCTT 3201 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || || | || || ||||| | | || || || ||||||||||| || || | Sbjct 3202 TGCT-TTAACGTTGTCGATTGTATCAGAACTCTCGACTTCCAAGGTAATGGTCTTGCCGG 3260 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| ||||| || |||||| Sbjct 3261 TGAGGGTTTTGACAAAGATCTGCATA 3286 >seq102355 Length=2708 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| || || || |||||||| || ||||||||| ||| | | ||||||| Sbjct 838 AACGAGATGGAGCGTCGATTCTTTTTGGATATTGTAATCGGCGAGAGTACGGCCGTCTTC 779 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| || ||| | || | ||||||||| || ||||||||||| ||||| Sbjct 778 GAGCTGTTTACCGGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTG 719 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || | || ||| | || || |||||| | | || || || | || || || || Sbjct 718 TATCTTCGTTTTAACATTGTCGATCGTATCGGAACTCTCGACTTCGAGAGTTATCGTCTT 659 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| |||||||| ||||| Sbjct 658 CCCCGTTAGGGTTTTCACAAAAATCTGCAT 629 >seq149253 Length=2080 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||||| ||| | |||||| || || ||||| || ||||||||||| Sbjct 836 CCTCCTCTCAATCTTAGAACAAGATGAAGTGTTGACTCTTTCTGGATGTTGTAATCAGCG 777 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||||||||| || ||||| | ||||| | ||||| || ||| Sbjct 776 AGTGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATCAATCTCTGTTGATCTGGAGGA 717 Query 15257 ATTCCTTCTTTGTC 15270 || ||||||||||| Sbjct 716 ATCCCTTCTTTGTC 703 >seq78250 Length=3191 Score = 98.7 bits (108), Expect = 7e-16 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || || ||||| || || |||| | || || || || Sbjct 849 ATGAAGGGTGGATTCCTTCTGGATATTGTAGTCCGCCAGGGTTCTTCCATCCTCCAACTG 790 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||| | | | || | | ||| || || ||||| ||||||||||| ||| || Sbjct 789 CTTGCCGGAGAAAATGAGCCTTTGCTGATCAGGAGGAATACCTTCTTTGTCCTGAATCTT 730 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| |||| |||||||| | | || || ||||||||||||||||| || || Sbjct 729 GGCTTTGACATTTTCGATGGTATCCGAACTCTCGACCTCTAAGGTAATGGTTTTGCCGGT 670 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || | |||||| Sbjct 669 GAGGGTTTTGACGAAGA-TTGCAT 647 >seq75854 Length=3247 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| || ||||| | ||| | || || || ||||| ||||| |||||| | Sbjct 2341 CCTCCCCTCAACCTCAAAACCAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCGGCT 2400 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | || || || || || ||||| | |||| ||| ||||| || |||| Sbjct 2401 AAAGTTCTACCATCCTCCAACTGCTTTCCAGCAAAGATCAGACGCTGTTGATCCGGTGGA 2460 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || || ||| ||| | || || ||||| | |||| || Sbjct 2461 ATCCCTTCTTTGTCCTGTATCTTAGCCTTCACATTGTCGATCGTATCAGAACTTTCAACC 2520 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || ||||| || || | || || || || || ||||| Sbjct 2521 TCCAATGTGATTGTTTTTCCAGTTAACGTCTTAACGAAGATCTGCAT 2567 Score = 98.7 bits (108), Expect = 7e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || ||||| || || || ||| ||| |||| |||| || | || Sbjct 2821 TGAAGGGTTGACTCCTTTTGGATATTATAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGC 2880 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | || | |||||||| || ||||||||||| ||||| || ||| Sbjct 2881 TTGCCGGCGAAGATGAGCCGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCTTG 2940 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || || | || |||||||| | | || || || | ||||| || || || || Sbjct 2941 GTTTTGACGTTATCAATGGTATCTGAACTCTCCACCTCGAGAGTAATCGTCTTCCCAGTT 3000 Query 15341 AGAGTTTTTACAAAAATTTGCATATTT 15367 || ||||| ||||| || ||||||||| Sbjct 3001 AGTGTTTTCACAAAGATCTGCATATTT 3027 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAAT-CGCTTAGAATTCTCGCGTCTTCTAATT 15218 |||||||||||| || || || || ||||| | |||| || |||| | |||||||| | Sbjct 2592 ATGAAGGGTGGATTCCTTCTGGATATTGTAGTCCGCTAAG-GTTCTGCCATCTTCTAACT 2650 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278 | || || ||| |||| | | || || || ||||| |||||||| || ||| | Sbjct 2651 GCTTTCCGGCGAATATGAGTCTCTGCTGATCAGGAGGAATACCTTCTTTATCCTGAATCT 2710 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 || || || | || || ||||| | | || || ||||||||||| || ||||| | Sbjct 2711 TGGCTTTGACGTTGTCGATTGTATCAGAACTCTCGACTTCTAAGGTAATTGTCTTACCGG 2770 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | || ||||| || || || |||||| Sbjct 2771 TGAGGGTTTTGACGAAGATCTGCATA 2796 >seq40887 Length=4418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| | ||| | ||||| || || || ||||| |||||||||||| Sbjct 2071 CCTCCTCTCAATCGAAGAACGAGGTGAAGAGTTGATTCCTTTTGGATGTTGTAATCGGCC 2012 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | ||||||||| || || || ||| | || | | ||||||||| ||| Sbjct 2011 AAGGTGCGGCCGTCTTCTAGCTGCTTTCCGGCGAAGATAAGCCTTTGTTGGTCTGGGGGA 1952 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||||| ||| || | || |||||||| | || || Sbjct 1951 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGACGTTGTCAATGGTATCTGAGCTCTCGACT 1892 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376 || | || || || || || || ||||| ||||| || || ||||| | || | ||||| Sbjct 1891 TCGAGAGTGATCGTCTTTCCGGTGAGAGTCTTTACGAAGATCTGCATCTGTGTATATAAA 1832 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 ||| |||||||| || || || |||||||| || ||| || | | | ||||| | | Sbjct 2504 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAAGG-TCCGGCCATCTTCAAGCT 2446 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278 |||| || ||| | || | ||||| || || ||||| ||||||||||| |||| Sbjct 2445 GTTTTCCGGCGAAGATAAGTCGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGTATTT 2386 Query 15279 T-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 | ||| || ||| | || || || ||| |||| || || ||||| || |||||||| Sbjct 2385 TAGCT-TTGACATTGTCGATTGTGTCGGAGCTTTCCACTTCCAAGGTGATTGTTTTACCG 2327 Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || ||||| ||||| Sbjct 2326 GTGAGAGTCTTGACGAAAATCTGCAT 2301 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || |||||||| ||| | | | |||| || Sbjct 2966 AACCAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCCAACGTCCGGCCGTCCTC 2907 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || ||||| || ||| | || | | || ||||| ||| || ||||| || || Sbjct 2906 CAACTGTTTTCCGGCGAAGATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 2847 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || |||||| || ||| | || ||||| ||| |||| || || ||||||||||||| Sbjct 2846 GATCTTTGCT-TTCACATTATCGATGGTGTCGGAGCTTTCAACTTCCAAGGTAATGGTTT 2788 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || |||| || || ||||| || |||||| Sbjct 2787 TTCCGGTCAAGGTCTTCACAAAGATCTGCATA 2756 >seq48514 Length=4088 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| || | ||| | ||| | ||||| || ||||| ||||| ||||| | Sbjct 2942 CCTCCCCTCAACCTCAGAACCAGATGCAAAGTGGATTCCTTTTGGATGTTATAATCAGCT 3001 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | |||| | ||||| || || || ||| || | |||| ||||||||| || |||| Sbjct 3002 AAAGTTCTACCATCTTCCAACTGCTTACCAACGAAGATCAGACGTTGTTGATCCGGTGGA 3061 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || || ||| ||| | || || |||| |||| || Sbjct 3062 ATCCCTTCTTTGTCCTGTATCTTAGCCTTCACATTGTCGATCGTATTAGAGCTTTCAACC 3121 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || | ||||| || || | || || || || || ||||| Sbjct 3122 TCCAGTGTGACTGTTTTTCCAGTTAACGTCTTGACGAAGATCTGCAT 3168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358311998769510