Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq27206 89.7 4e-13 seq102355 84.2 2e-11 seq75854 82.4 6e-11 >seq27206 Length=5223 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| ||||||||||||||||| | ||| || |||| |||| |||||| || Sbjct 3089 GTCGATTCCTTCTGAATATTGTAATCCGCTAGGGTTCTGCCGTCTTCCAACTGTTTCCCG 3148 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || || |||||||| ||| | || || || || || || ||| Sbjct 3149 GCGAATATGAGCCTTTGCTGATCAGGGGGGATCCCTTCCTTATCCTGGATCTTTGCTTTA 3208 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | ||| ||||| | ||| ||| | ||||||||| || || || | ||| Sbjct 3209 ACGTTGTCGATTGTATCAGAACTCTCGACTTCCAAGGTAATGGTCTTGCCGGTGAGGGTT 3268 Query 19025 TTGACAAAAATTTGCAT 19041 |||||||| || ||||| Sbjct 3269 TTGACAAAGATCTGCAT 3285 >seq102355 Length=2708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 18844 CGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACC 18903 ||| || || ||||| ||||||||||| || | || | |||| || ||||||||||| Sbjct 826 CGTCGATTCTTTTTGGATATTGTAATCGGCGAGAGTACGGCCGTCTTCGAGCTGTTTACC 767 Query 18904 CGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTT 18963 || | ||||| | || |||||| || | || || ||||| || ||| ||| Sbjct 766 GGCGAAGATAAGACGTTGTTGATCCGGAGGAATTCCTTCCTTGTCCTGTATCTTCGTTTT 707 Query 18964 TACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | | ||| |||||| | ||| ||||| || || || || || |||| || Sbjct 706 AACATTGTCGATCGTATCGGAACTCTCGACTTCGAGAGTTATCGTCTTCCCCGTTAGGGT 647 Query 19024 TTTGACAAAAATTTGCATTTTAAATC 19049 ||| |||||||| ||||| | || || Sbjct 646 TTTCACAAAAATCTGCATCTAAATTC 621 >seq75854 Length=3247 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || || | |||||| || ||||||||||||||||||||||| |||| || | | || Sbjct 2128 AAGACAAGGTGCAAAGTGGACTCCTTTTGAATATTGTAATCAGCCAAAGTCCTCCCATCT 2187 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATC 18927 || ||||| || || ||| | ||||| ||||||||||| Sbjct 2188 TCAAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATC 2225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410146161357340