Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_004928.1 Length=167560 Score E Sequences producing significant alignments: (Bits) Value seq30067 196 5e-45 seq118173 86.0 7e-12 >seq30067 Length=5021 Score = 196 bits (216), Expect = 5e-45 Identities = 320/458 (70%), Gaps = 6/458 (1%) Strand=Plus/Minus Query 142173 CATGAGGTCATTAATCTGAATTCCGTAGTCCATATGTCGAATACGGTTTTCATCCACGCC 142232 ||||| | |||||| |||||| | ||||| | ||| || | | ||||| || | || Sbjct 3727 CATGAATTTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCC 3668 Query 142233 TTTGTTATTTTTCAGAACTAATAGGTTCTCTACTTCTAAGTGCCACATTGGATAATACGC 142292 |||| ||||| | |||||||| || || ||||| || ||||| ||||||||| | Sbjct 3667 CCTGTTGTTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAAT 3608 Query 142293 TGTAGCAGCACCACCACGAATACCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATG 142352 || ||||| ||||| | || ||| |||||||||||||||||||| || |||| ||||| Sbjct 3607 AGTTGCAGCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATG 3548 Query 142353 TTTCCAGAATGGAATAACACCCGTATGTCGAACTTCACCCATACCGATCTTAGAACCTTC 142412 ||| | || || ||| ||| ||||| |||| || | | || | ||| Sbjct 3547 TTTATAAAAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAA 3488 Query 142413 TGCACGAAGCATACCAACGTTGATACCGATACCAGCTCGTTTAGAAATATATTCAATAAT 142472 ||| |||| || | || ||||| || ||||| |||| |||| ||||| || ||| Sbjct 3487 TGCGCGAATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAAT 3428 Query 142473 TGATGCTGAAGTTTT---GTTAATAGATTTTAACGAATCACCGGCTTCAATAACTACACA 142529 || ||| |||| | ||||| || ||||| |||| | |||||| | ||||| Sbjct 3427 AGA-GCT--AGTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACA 3371 Query 142530 ACTAGAGAACTGGCGAGTTGGAGTACGAGCACCTGCCATAATTGGGGTTGGCAATGAAAC 142589 | | || || ||||| ||||| | | || | ||||||||| ||||| ||||||| Sbjct 3370 AGAACTAAATTGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTAATGAAAT 3311 Query 142590 TTGATGAGTAGAAACGGCATCATAAAAACGAATAATAT 142627 || | |||||||| |||| ||||||||| ||||| Sbjct 3310 TTTAAAAGTAGAAATAGCATTGTAAAAACGATGAATAT 3273 >seq118173 Length=2464 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 140456 AATCTCATCAAATACTTTGGATGGATCGGTATAAAGATTTCGCATAATATGAGTATATGA 140515 ||| |||||||||||| |||||| | | || |||| || ||||||||||| || Sbjct 1999 AATATCATCAAATACTACAGATGGAGAGTTGACAATGTTTCTAATTATATGAGTATAAGA 2058 Query 140516 ACGAGAGTGAATAGTTTCACTGAATGTCCATGTTGCAACCCACGTATCTAATGAAGGGTC 140575 |||||| || |||||||| || | ||||||| ||||||| || |||| | ||| Sbjct 2059 ACGAGAATGTATAGTTTCTGAAAAAGACCATGTTTCAACCCATGTCTCTAGTTCAGGAAT 2118 Query 140576 GGAAATCAGTGCCATAAGTACCGCAGATGGGGCCCTGCCTTGGATAGAATCCAATAATGA 140635 ||||| | || | || | | ||| || ||||| |||||||| | ||||| Sbjct 2119 AGAAATGATTGGTAAAAAAGCTATATTAGGGCTTCTTCCTTGAATAGAATCAAGTAATGT 2178 Query 140636 TTGATACTTAAGATT 140650 |||||| || | ||| Sbjct 2179 TTGATATTTTAAATT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530193362112000