Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq40887 98.7 7e-16 seq86036 89.7 4e-13 >seq40887 Length=4418 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| || |||||||||||||| | ||| |||| ||| Sbjct 3193 ACCAAATGCAAAGTCGACTCCTTCTGAATATTATAATCAGCAAGCGTACGACCATCCTCC 3134 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || || || |||||||| |||||||| ||||| ||| | || | ||||| ||||| | Sbjct 3133 AACTGCTTCCCTGCAAAGATCAACCGCTGCTGATCCGGTGGGATTCCTTCCTTATCCTGA 3074 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || || ||| || || | ||| || || | ||||| || || Sbjct 3073 ATCTTCGCTTTCACATTATCAATCGTGTCAGAGCTCTCAACCTCCAATGTAATCGTCTTT 3014 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || |||||||||||||| ||||| Sbjct 3013 CCAGTCAACGTCTTCACAAATATCTGCAT 2985 >seq86036 Length=3019 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||| || || || |||||||| ||| ||| |||| |||||||| || |||||||| Sbjct 246 CTCCTTCTGGATGTTATAATCAGCTAACGTACGACCATCTTCCAATTGCTTCCCTGCAAA 305 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 ||||||| || || || | || | || || ||||| ||||| || || | Sbjct 306 GATCAACCTCTGTTGATCAGGTGGGATCCCCTCCTTATCCTGGATTTTAGCCTTCACGTT 365 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | | |||||| | ||||| || | ||| || |||||||| |||||||||||||| Sbjct 366 ATCGATAGTATCAGAGCTTTCCACCTCCAGCGTTATAGTTTTACCCGTTAAAGTCTTCAC 425 Query 44110 AAATATTTGCAT 44121 || || ||||| Sbjct 426 GAAGATCTGCAT 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350989430024280