Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq30067 102 1e-16 seq159469 89.7 8e-13 >seq30067 Length=5021 Score = 102 bits (112), Expect = 1e-16 Identities = 280/424 (66%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 147120 ttttATAACGCTGTTTCAACTCAAAAACTTTCGCTACCTACACCGATTATGGCAGGCGTT 147179 ||||| || ||| |||| ||| ||| |||| |||| ||||| |||||| | || || Sbjct 3284 TTTTACAATGCTATTTCTACTTTTAAAATTTCATTACCAACACCAATTATGTCTGGAGTC 3343 Query 147180 CGTACCCCGACACGTCAATTTAGCTCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCGT 147239 | || || || ||||||||||| || ||||| ||| |||| || || | | Sbjct 3344 AGAACTCCTACTCGTCAATTTAGTTCTTGTGTTTTAATTGAATGTGCTGATAATTTAAAT 3403 Query 147240 TCGATCAACAAGGTATCTGAAGCTATCGTTGATTACATTAGTAAACGTGCGGGTATTGGC 147299 || || || | | || |||| ||| | || || ||||||| || ||||| Sbjct 3404 TCCATTAATGCGACAACTAGCTCTATTGTTAAATATGTTTCCCAACGTGCTGGAATTGGT 3463 Query 147300 GTAAACGGTGGTGCAATTCGAGCAG-AGG--GTTCGGTTGTACGTGCGGGTGAA--ATTC 147354 | || | || |||||| ||| ||| || | || | | | ||| ||| Sbjct 3464 ATTAATGCAGGACAAATTCGCGCATTAGGAAGTCCTATTAGAAACG---GAGAAGCATT- 3519 Query 147355 GTCACACTGGCGTAATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGTGTTCTC 147414 ||| ||||| || ||||| | ||||| ||||| | || || ||||| ||||||| Sbjct 3520 -TCATACTGGTTGTATACCTTTTTATAAACATTTTCAAAGCGCTGTAAAATCTTGTTCTC 3578 Query 147415 AAGGTGGTGTACGTGGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAGAAGTAG 147474 |||| ||||| | || || ||||| ||| | ||| || || ||||| || ||||| | Sbjct 3579 AAGGAGGTGTTAGAGGTGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTGAAGTTG 3638 Query 147475 AAAAGCTTCTTGTTCTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGTCATCTTG 147534 |||| | | ||| | || ||||||| || ||||||| || | | |||||| | | Sbjct 3639 AAAATTTATTAGTTTTAAAAAACAACAGGGGAATTGAAGAAAATAGAGTACGTCATGTCG 3698 Query 147535 ACTA 147538 |||| Sbjct 3699 ACTA 3702 >seq159469 Length=1977 Score = 89.7 bits (98), Expect = 8e-13 Identities = 285/432 (66%), Gaps = 24/432 (6%) Strand=Plus/Minus Query 147120 ttttATAACGCTGTTTCAACTCAAAAACTTTCGCTACCTACACCGATTATGGCAGGCGTT 147179 |||||||| || |||| ||| ||| |||| |||| ||||| |||||| | || || Sbjct 1725 TTTTATAATGCAATTTCTACTTTTAAAATTTCATTACCAACACCCATTATGTCTGGAGTA 1666 Query 147180 CGTACCCCGACACGTCAATTTAGCTCGTGTGTGAAAATCGAATCTGGCGACTCGCTGCGT 147239 || || || || ||||| ||||| || ||||| |||||||| || || | Sbjct 1665 CGAACTCCTACTCGTCAGTTTAGTTCTTGTGTTTTAATCGAATGTGCTGATAATTTAAAC 1606 Query 147240 TCGATCAACAAGGTATCTGAAGCTATCGTTGATTACATTAGTA----AACGTGCGGGTAT 147295 || || || | || |||| | ||| ||| || ||| ||||||| || || Sbjct 1605 TCTATTAAT--GCTACTACTAGCTCTA-TTG-TTAAATATGTATCACAACGTGCTGGAAT 1550 Query 147296 TGGCGTAAACGGTGGTGCAATTCGAGCAGAGGGTTCGGTTGTACG-TGCG----GGTGAA 147350 || | || | || |||||| || ||| || || | | | |||||| Sbjct 1549 CGGTATTAATGCGGGACAAATTCGCGC-----GTTAGGAAGTCCTATTAGAAACGGTGAA 1495 Query 147351 --ATTCGTCACACTGGCGTAATTCCTTTCTGGAAACACTTTCAGACTGCGGTTAAATCGT 147408 ||| ||| ||||| || ||||| | ||||||||||| | ||| || ||||| | Sbjct 1494 GCATT--TCATACTGGTTGTATACCTTTTTATAAACACTTTCAAAGTGCCGTAAAATCCT 1437 Query 147409 GTTCTCAAGGTGGTGTACGTGGCGGTGCTGCGACTCTGACTTACCCGATCTGGCACTTAG 147468 |||| ||||| || || | || || ||||| ||| | ||| || || ||||| || | Sbjct 1436 GTTCACAAGGCGGAGTGAGAGGAGGAGCTGCAACTATTTTTTATCCAATATGGCATTTTG 1377 Query 147469 AAGTAGAAAAGCTTCTT-GTTCTGAAGAACAACAAAGGTGTTGAAGAGAACCGTATTCGT 147527 |||| | |||| || || ||| | || || || | ||| ||||||| || | | ||| Sbjct 1376 AAGTTG-AAAGTTTATTAGTTTTAAAAAATAATAGAGGAATTGAAGAAAATAGAGTGCGT 1318 Query 147528 CATCTTGACTAC 147539 ||| |||| ||| Sbjct 1317 CATATTGATTAC 1306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 774762141146400