Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq75854 87.8 1e-12 >seq75854 Length=3247 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| | |||||||| |||| ||| | || ||||| ||||| ||||| |||||| | Sbjct 2341 CCTCCCCTCAACCTCAAAACCAGATGCAAAGTCGATTCCTTTTGGATGTTATAATCGGCT 2400 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| || ||| ||||| || || || ||| | || || | ||||||||| || Sbjct 2401 AAAGTTCTACCATCCTCCAACTGCTTTCCAGCAAAGATCAGACGCTGTTGATCCGGTGGA 2460 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| || || ||||| | | | | | ||| | ||| Sbjct 2461 ATCCCTTCTTTGTCCTGTATCTTAGCCTTCACATTGTCGATCGTATCAGAACTTTCAACC 2520 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| || || ||||| || || ||||| || || || || |||||| Sbjct 2521 TCCAATGTGATTGTTTTTCCAGTTAACGTCTTAACGAAGATCTGCATT 2568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415107019646910