Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq30067 145 1e-29 seq159469 127 3e-24 >seq30067 Length=5021 Score = 145 bits (160), Expect = 1e-29 Identities = 274/403 (68%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 43625 TTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTG 43684 || || ||||| || | ||||| | || || | || ||||||||| | ||| ||||| Sbjct 3720 TTATTAATTTGAATTGCATAGTCGACATGACGTACTCTATTTTCTTCAATTCCCCTGTTG 3661 Query 43685 TTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCA 43744 ||||| | ||| | | ||||||||||||| |||||| |||||||| ||| ||| ||| Sbjct 3660 TTTTTTAAAACTAATAAATTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 3601 Query 43745 GCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAG 43804 || ||||| | ||||| || || || ||| |||||| || | || |||| ||| | Sbjct 3600 GCTCCACCTCTAACACCTCCTTGAGAACAAGATTTTACAGCGCTTTGAAAATGTTTATAA 3541 Query 43805 AACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGA 43864 || || ||| |||||| || |||| || ||| ||| || ||| || ||| Sbjct 3540 AAAGGTATACAACCAGTATGAAATGCTTCTCCGTTTCTAATAGGACTTCCTAATGCGCGA 3481 Query 43865 ATAGCGCCACCGTTGATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTT 43924 || || | || ||||| || ||||| |||| | || ||| | ||| || || || Sbjct 3480 ATTTGTCCTGCATTAATACCAATTCCAGCACGTTGGGAAACATATTTAACAATAGAGCTA 3421 Query 43925 GCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAAC 43984 | || || |||||| || | | || | | ||| || || || || ||||| Sbjct 3420 GTTGTCGCATTAATGGAATTTAAATTATCAGCACATTCAATTAAAACACAAGAACTAAAT 3361 Query 43985 TGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTA 44027 || ||||| || |||| || |||| | |||||| || |||| Sbjct 3360 TGACGAGTAGGAGTTCTGACTCCAGACATAATTGGTGTTGGTA 3318 >seq159469 Length=1977 Score = 127 bits (140), Expect = 3e-24 Identities = 272/404 (67%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 43625 TTGTTGATTTGGATACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTG 43684 || || ||||| | |||| |||| || || | || ||||||||| | || | || Sbjct 1289 TTATTAATTTGAAGTGCGTAATCAATATGACGCACTCTATTTTCTTCAATTCCTCTATTA 1348 Query 43685 TTTTTCAGAACAAGGATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCA 43744 ||||| | ||| | | |||||||||||| |||||| |||||||| ||| ||| ||| Sbjct 1349 TTTTTTAAAACTAATAAACTTTCAACTTCAAAATGCCATATTGGATAAAAAATAGTTGCA 1408 Query 43745 GCGCCACCGCGTACACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAG 43804 || || || | || || || ||||| || |||||| ||| | || || | ||| | Sbjct 1409 GCTCCTCCTCTCACTCCGCCTTGTGAACAGGATTTTACGGCACTTTGAAAGTGTTTATAA 1468 Query 43805 AACGGAATAATACCAGTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGA 43864 || || ||| |||||| || ||||||| ||| ||| || ||| || ||| Sbjct 1469 AAAGGTATACAACCAGTATGAAATGCTTCACCGTTTCTAATAGGACTTCCTAACGCGCGA 1528 Query 43865 ATAGCGCCACCGTTGATACCGATACCAGCGCGTT-TGCTAATATAGTCAACGATTGAACT 43923 || || | || |||||||| ||||| |||| || | | ||| | ||| || || || Sbjct 1529 ATTTGTCCCGCATTAATACCGATTCCAGCACGTTGTGAT-ACATATTTAACAATAGAGCT 1587 Query 43924 TGCGGTAGCGTTAATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAA 43983 | ||||| ||||| | | | || | | |||||| || || || ||||| Sbjct 1588 AGTAGTAGCATTAATAGAGTTTAAATTATCAGCACATTCGATTAAAACACAAGAACTAAA 1647 Query 43984 CTGGCGAGTCGGGGTTCGAACACCAGCAAGAATTGGCGTCGGTA 44027 ||| ||||| || ||||| || |||| | ||| || || |||| Sbjct 1648 CTGACGAGTAGGAGTTCGTACTCCAGACATAATGGGTGTTGGTA 1691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738048656186400